Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2053
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    30   0.32 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    28   1.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   1.7  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.2  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   6.9  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.9  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 99  IDSLCFLFSKYFNQSLIVDGKGLTFFTEF 185
           I+SLC LF+K+ N   + + + +TF T+F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 381 MCQSCKLANKIQCFECKC-RYLASSLSTLDEGLQNGWDIF 497
           +C+S    +K QC+ C+C R  +   ++L     + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 93  DEID--SLCFLFSKYFNQSLIVDGKGLTF 173
           DEID  SLC L  K+F  +  V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 66  VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTD 242
           V FE  Q L DE+  + FL +     ++ VD    T   E  K  +  ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
 Frame = +3

Query: 567  DVINENNLITQIFVQFFYNL-----ICDKAYSLYTKRDM---CVPFVKECKKATIGLRQE 722
            DVI E   I+  +  FF        +C++    +    +   C+P +      T+GL++ 
Sbjct: 786  DVIQERPKISYDWFDFFLRCGVDFTVCNRYTHNFNNEHLDEACIPSLNPDTLRTLGLKEG 845

Query: 723  DHERVLSILNAPCNGFST 776
            D  RV++ +N   NG ST
Sbjct: 846  DIIRVMNHVN-ELNGVST 862


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +3

Query: 66  VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDN 245
           + F     R  ++SLCFLF    NQ    D   L  F   N+ ++++       + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 376 SSTSGAGVGL*YVCKYCIMVLNWGTCLMNSS 284
           S+TSGA   L  V K  +M L  G CL+ +S
Sbjct: 537 SATSGAAGDLFSVSKNLMMTLTAGLCLITAS 567


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 230 QQHRQHTQCKKHFFDIFARRV 292
           Q H+ H   K HFF IF +++
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKI 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,955
Number of Sequences: 5004
Number of extensions: 69515
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)