Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2051
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    32   0.089
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.57 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   1.9  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   1.9  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    27   3.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   7.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   7.8  

>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 31.9 bits (69), Expect = 0.089
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 636 CVRCAGE-HIVADCPRPRDGPFSCANCG-KDHA 544
           C  C  + HIV DCP  +D    C  CG K+H+
Sbjct: 79  CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHS 111


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 0.57
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 108 GDIPVPTVQNSAPQPTDPENMEVTENSTP 22
           G IP+P    SAP P  P +   T    P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 22.6 bits (46), Expect(2) = 0.57
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 279 SKKVQPTPAPRGRTSAGAPTISRPTS 202
           +KK  P P P  R + G P I   +S
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSS 332


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 642  VRCVRCAGEHIVADCPRPRDGPFSCANCGKDHAAVDRRCAVFRKR 508
            VRC  C  +H+ A CP        C  CG  H +    C + R +
Sbjct: 1309 VRCRCCGIKHLPAHCPLSIVPLEICFLCGTPHFSGRDTCPMLRNK 1353


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 490 YSHHPGPLAEDRTPSVDGGMVLPAVGTGKRAVPRP 594
           Y H P PL+E   P    G V+ A G  K  +P P
Sbjct: 758 YQHPPFPLSEQMLPLPTSG-VMMAPGAAKSGMPYP 791


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 540 VDRRCAVFRKRARMMGVTVPPPAPQAPRAGS 448
           VDR     RKRAR+     PP  PQ P A +
Sbjct: 127 VDRIAFAARKRARIEAFQPPPIIPQKPLAST 157


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = -3

Query: 288  PRQSKKVQPTPAPRG-----RTSAGAPTISRPTSGI 196
            P+ S    P PAP G     + S  AP +  P+SGI
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 288  PRQSKKVQPTPAPRGRTSAGAPTISRP 208
            P+ S  V P PAP G      P+++ P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAP 1131


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 642 VRCVRCAGEHIVADCP 595
           VRC  C G H  A CP
Sbjct: 129 VRCRACKGNHFTAQCP 144


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 303 AQANPPRQSKKVQPTPAPRGRTSAGAPTIS 214
           A A+  +  KKV P PAP   +    P+I+
Sbjct: 285 AWASVAKSKKKVTPAPAPAPESEPSKPSIA 314


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 99  PVPTVQNSAPQPTDPENMEVTENSTPAHTIPS 4
           PV +V N++P P  PE  + + N TP+ + P+
Sbjct: 594 PVTSVLNTSPLPKTPEK-DRSLNVTPSSSTPT 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,596
Number of Sequences: 5004
Number of extensions: 48386
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)