Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2051
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -2

Query: 298 GQPATAVKESPTYSCSPWSHFCW 230
           G P   V  +P +   PW  F W
Sbjct: 541 GGPLVMVCSAPVWRFQPWGPFTW 563


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +2

Query: 194 VMPLVGRDIVGAPAEVRPRGAG 259
           ++PL+   ++   A++ P+G+G
Sbjct: 111 ILPLIVSSLISGMAQLDPKGSG 132


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 270  VQPTPAPRGRTSAGAPTISRPTSGIT 193
            + P+P+ RGR   G+  ++ P + ++
Sbjct: 1377 LSPSPSDRGRNDDGSDRLTSPPTPLS 1402


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 455 ARGACGAGGGTVTPIILARLRKTAHRL 535
           A G C  GGG ++ ++   L   A  L
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 455 ARGACGAGGGTVTPIILARLRKTAHRL 535
           A G C  GGG ++ ++   L   A  L
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 455 ARGACGAGGGTVTPIILARLRKTAHRL 535
           A G C  GGG ++ ++   L   A  L
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 455 ARGACGAGGGTVTPIILARLRKTAHRL 535
           A G C  GGG ++ ++   L   A  L
Sbjct: 5   ALGRCAGGGGRLSSVLSLSLTSLASSL 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,609
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)