Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2050
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   4.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   9.6  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   9.6  

>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/68 (17%), Positives = 31/68 (45%)
 Frame = -3

Query: 426 RVVAFHDITVTSLVLALQVPSVRVFDFVFKRIFGMSIIIFMVRLVSMMYWRVFMVMHEYG 247
           R+ ++H +  +  VLA++  +++    +   I    I+I ++   +   +     +H  G
Sbjct: 335 RLTSYHGVDASPFVLAIKDANIKALPSILNAI----ILISVISSANAQLYAGSRAIHSLG 390

Query: 246 CSVYTRSC 223
           C+ +   C
Sbjct: 391 CNGFAPKC 398


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
 Frame = -3

Query: 249 GCSVYTRSCMIRCY----WY 202
           GCS Y R+C ++C+    WY
Sbjct: 141 GCSHYMRNCKVQCFDCHEWY 160


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 129 CFIPVYY*TRCDSWSW 176
           C++ +YY   C SW+W
Sbjct: 622 CWVLLYYYQGCPSWTW 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,030,245
Number of Sequences: 5004
Number of extensions: 57077
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)