Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2050
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic glut...    29   3.9  
L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate recep...    29   3.9  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    29   3.9  
AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical ...    29   5.2  
U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst compone...    28   9.1  
AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    28   9.1  

>Z92849-14|CAE17857.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -3

Query: 324 MSIIIFMVRLVS----MMYWRVFMVMHEYGCSVYTRS--CMIRCYWYNMVGLTFI 178
           +S+I+ MV L+     M Y    M +H     +Y      +I+C  YN VG TFI
Sbjct: 122 VSVIVAMVLLIVVENLMCYLTTIMTLHAISMILYLDKSLALIKCGIYNSVGKTFI 176


>Z78414-4|CAE17982.1|  359|Caenorhabditis elegans Hypothetical
           protein H12D21.11 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -3

Query: 324 MSIIIFMVRLVS----MMYWRVFMVMHEYGCSVYTRS--CMIRCYWYNMVGLTFI 178
           +S+I+ MV L+     M Y    M +H     +Y      +I+C  YN VG TFI
Sbjct: 122 VSVIVAMVLLIVVENLMCYLTTIMTLHAISMILYLDKSLALIKCGIYNSVGKTFI 176


>U34661-1|AAA92006.1|  962|Caenorhabditis elegans ionotropic
           glutamate receptor subunitprotein.
          Length = 962

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 378 LQVPSVRVFDFVFKRIFGMSIIIFMVRLVSMMYWRVFMVMHEYGCSVYTRSCMIRCYWYN 199
           +Q  S  ++ ++     G+S++IF+V   S   WRV       G ++     +  C W+ 
Sbjct: 587 MQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSRG-GFTISNDFSVYNCLWFT 645

Query: 198 M 196
           +
Sbjct: 646 L 646


>L16559-2|AAA27933.3|  962|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 1 protein.
          Length = 962

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = -3

Query: 378 LQVPSVRVFDFVFKRIFGMSIIIFMVRLVSMMYWRVFMVMHEYGCSVYTRSCMIRCYWYN 199
           +Q  S  ++ ++     G+S++IF+V   S   WRV       G ++     +  C W+ 
Sbjct: 587 MQPLSTEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSRG-GFTISNDFSVYNCLWFT 645

Query: 198 M 196
           +
Sbjct: 646 L 646


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 210 YWYNMVGLTFIPMTMSHIV 154
           Y+Y MV +TFIP  ++HI+
Sbjct: 52  YFYKMVKITFIPSLLTHII 70


>AF036704-2|ABA00183.1|  281|Caenorhabditis elegans Hypothetical
           protein ZK185.4 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 420 VAFHDITVTSLVLALQVPSVRVFDFVF-KRIFGMSIIIFMVRLVSMMYWRVFMVMHEYGC 244
           +++H   V S+   L  P++  F  ++ K  F  +  +F +    + Y  VFMV+  +GC
Sbjct: 187 ISYHVKIVISICYFLSAPAIATFYALYWKACFTWAYELFAL----VEYLDVFMVIFYHGC 242

Query: 243 SVY 235
            VY
Sbjct: 243 CVY 245


>U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst component
           protein 7 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -3

Query: 501 DDCVETIVLIGGVFHNTDRSISFMQRVVAFHDITVTSLVLALQVPSVRVFDFVFKRIF 328
           +D  + +   G V   T  +++F+  + A H +TVT  VLAL  P     + +  ++F
Sbjct: 396 EDTTKFVPPDGNVHPTTASTLNFLSSLTA-HRVTVTQHVLALTAPQGSNTNLLLPKLF 452


>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 734 KQLTNYD*YFDVWKHFSLH 790
           K+LT+ D YFD + HF +H
Sbjct: 19  KELTSKDYYFDSYAHFGIH 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,726,396
Number of Sequences: 27780
Number of extensions: 322882
Number of successful extensions: 770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)