Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2049
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 71 2e-13
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 34 0.020
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 29 0.44
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 2.3
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 26 5.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.4
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 7.2
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 9.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 9.5
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 9.5
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 9.5
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/80 (42%), Positives = 51/80 (63%)
Frame = -1
Query: 622 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 443
+CRY ++DFE+ + +G + K+ +SW PD A +K KM+YSSS D L+++ G+
Sbjct: 61 DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114
Query: 442 KYIQATDLSEASQEAVEEKL 383
IQATD SE + E V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -1
Query: 559 SKKQKLFLMSWCPDTAKVKKKMLYSSS 479
SKK L L+S+ P+ A V++KMLY+SS
Sbjct: 76 SKKNLLQLISYVPENANVRRKMLYASS 102
Score = 28.7 bits (61), Expect = 0.77
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = -1
Query: 547 KLFLMSWCPDTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 395
K+ + CP A VK +M+YSSS D++K L + + I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -1
Query: 571 TSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVE 392
T++ LF++ W P M+Y+S+ + + V K +A D + + EAV+
Sbjct: 79 TTDGRLSTPLFMIYWRPSATPNDLSMIYASA-KVWFQDVSQVHKVFEARDSEDITSEAVD 137
Query: 391 EKL 383
E L
Sbjct: 138 EFL 140
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/95 (25%), Positives = 36/95 (37%)
Frame = -1
Query: 601 DFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATD 422
+F+ Q T A+K + P T K + ++ A KK + G +KY +
Sbjct: 120 NFKRRTQFAFTGRATKSNAGVMDVQSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVIN 179
Query: 421 LSEASQEAVEEKLRATDRQ*TAFTHELATKPNPLS 317
S + E K R DR + FT LS
Sbjct: 180 DSNVENKE-ETKDRNLDRALSKFTQSREKNEQNLS 213
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 481 SFDALKKSLVGVQKYIQATDLSEASQ 404
S +AL++ L G + Y+Q+TD++ S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 419 LGSVSGGRRREAPRHRSPINSIYTRARDE---TEPALRHSCPDDTRPRHH*PLSIITKEN 249
LG G ++ E+ R + P S + EP +RHS RP+ H S +T+++
Sbjct: 20 LGEEDGRQKGESSRKKRPPLSRKNPSNVSFWSNEPIIRHSSVKTDRPQFHRADSTVTEQS 79
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 528 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 644
HD+ +++ S +H C ++S P+ LH+P+P C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.2
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = +3
Query: 312 VSESGFGFVASSCVNAVYWRSVARSFSSTAS*DASERSVAWMYF*TPTR---DFFRASNE 482
+ E +G ++ SCV+ YW + + A +R + + + P++ R N
Sbjct: 56 LEEEQWGVLSGSCVDGTYWSAEEKELFFQAVARNGKRDLDLIAYSIPSKSAVQIERYINA 115
Query: 483 LEYNIFFLTLAVSGHHDIR-KSFCFLLASDVP 575
LE + +L H D +S C L D+P
Sbjct: 116 LENELRWL----RNHVDASVRSQCLLKYEDIP 143
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 162 CREA-VMRFGLKGGAAVVTIWVAHLCC 85
CR A +R G+K G ++ I V +CC
Sbjct: 7 CRSANTLRKGIKNGKLILKIIVNDVCC 33
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 386 APRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PL 270
APR R P ++ T A E P + P TR PL
Sbjct: 24 APRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPL 62
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 371 SPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKEN 249
SP+++ D ++PAL S P+H LS KEN
Sbjct: 391 SPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLSTEFKEN 431
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 188 YPRGLTRGPTTSKINHINTIRFPL**Y*AASGVV 289
YP LT TT K H +IRF Y ASG+V
Sbjct: 14 YPEALT---TTLKHGHATSIRFSTNGYHLASGLV 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,512
Number of Sequences: 5004
Number of extensions: 52758
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -