Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2049
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       67   1e-11
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    67   1e-11
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       62   3e-10
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    62   3e-10
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    60   1e-09
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    29   2.9  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily as...    27   8.7  
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass...    27   8.7  
U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily ass...    27   8.7  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    27   8.7  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
 Frame = -1

Query: 622 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 443
           ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++
Sbjct: 66  ECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLE 124

Query: 442 K--YIQATDLSEASQEAVEEKLRATDR 368
               +QA+++S+  +++V+  L +  R
Sbjct: 125 SLFQVQASEMSDLDEKSVKSDLMSNQR 151


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
 Frame = -1

Query: 622 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQ 443
           ECRY   D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++
Sbjct: 66  ECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLE 124

Query: 442 K--YIQATDLSEASQEAVEEKLRATDR 368
               +QA+++S+  +++V+  L +  R
Sbjct: 125 SLFQVQASEMSDLDEKSVKSDLMSNQR 151


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
 Frame = -1

Query: 622 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGV 446
           +CRY +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G 
Sbjct: 79  DCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGK 137

Query: 445 QKYIQATDLSEASQEAVEEKL 383
               Q +D SE S + +  KL
Sbjct: 138 ILQFQVSDESEMSHKELLNKL 158


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
 Frame = -1

Query: 622 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGV 446
           +CRY +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G 
Sbjct: 79  DCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGK 137

Query: 445 QKYIQATDLSEASQEAVEEKL 383
               Q +D SE S + +  KL
Sbjct: 138 ILQFQVSDESEMSHKELLNKL 158


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = -1

Query: 622 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGV 446
           +CRY +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G 
Sbjct: 79  DCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGK 137

Query: 445 QKYIQATDLSEASQE 401
               Q +D SE S +
Sbjct: 138 ILQFQVSDESEMSHK 152



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = -1

Query: 583 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 410
           Q    SE S K+   L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+ 
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197

Query: 409 SQEAVEEKLRATDR 368
            +++V+  L +  R
Sbjct: 198 DEKSVKSDLMSNQR 211


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 410  RFREVGRLDVLLNSDKGLFQSVERARVQHLLLD 508
            RF E+G++D+  NS  G+ + ++   V  +LLD
Sbjct: 1828 RFLEIGKVDLSQNSSLGMAKLLDNVSVHGILLD 1860


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 299 RQGRSVGERVRFRRELVCKCC 361
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = -1

Query: 580 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 401
           C+  S+      + L+ +CP+ +  + +MLY+ S + +      V K  +  D+ E   E
Sbjct: 74  CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132

Query: 400 AVEEK 386
            +E K
Sbjct: 133 LLESK 137


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 592 YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 488
           + H   G+ E    + +F  S  PD+ K KKK+LY
Sbjct: 161 FIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 419 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 321
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


>U80450-11|AAM15595.1|  664|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform d protein.
          Length = 664

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 462
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform a protein.
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 462
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>U80450-8|AAK77616.1|  949|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 163, isoform c protein.
          Length = 949

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 DRWRGASLRRPPETLPRGRSLGCTSELRQGT 462
           +RWRG    +PP   PR  S    + L +GT
Sbjct: 435 ERWRGRMRGKPPTPPPRESSASPVNSLPRGT 465


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 419 LGSVSGGRRREAPRHRSPINSIYTRARDETEPA 321
           L ++S  R+   P  R P+ ++Y R +D   PA
Sbjct: 688 LTALSSSRKDPIPAPRGPVAAVYARGKDIPTPA 720


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,149,187
Number of Sequences: 27780
Number of extensions: 330747
Number of successful extensions: 995
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)