Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2048
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...   213   3e-56
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...   149   6e-37
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...   101   9e-23
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    87   3e-18
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    76   6e-15
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    27   3.9  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score =  213 bits (519), Expect = 3e-56
 Identities = 102/226 (45%), Positives = 139/226 (61%)
 Frame = +2

Query: 86  PVRGEDTMHPLAVTLEDLYAGKTTKLQLSKNVICAHCKGVGGKPGSLISCKDCRGQGIKV 265
           P +G+D +H + VTLEDLY GKTTKL L K VIC  C G GGK GS+ SC  C G G+K 
Sbjct: 104 PRKGKDLVHTIKVTLEDLYRGKTTKLALQKKVICPKCSGRGGKEGSVKSCASCNGSGVKF 163

Query: 266 SYQQIAPHMTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQ 445
             + + P M ++    CP C G GET  +           V+++ KIL VH+EKGM + Q
Sbjct: 164 ITRAMGP-MIQRMQMTCPDCNGAGETIRDEDRCKECDGAKVISQRKILTVHVEKGMHNGQ 222

Query: 446 KIYFRGEGDQQPDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGFEFVAKHL 625
           KI F+ EG+Q P   PGDVI V+ QK H +FKR+GD+L  +  + L  AL G + V +HL
Sbjct: 223 KIVFKEEGEQAPGIIPGDVIFVIDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHL 282

Query: 626 DGRDLLIRHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDV 763
           D R L I  +PGE I+P ++K + G+GM + +   + GN Y++F V
Sbjct: 283 DDRWLTIPIIPGECIRPNELKVLPGQGM-LSQRHHQPGNLYIRFHV 327


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score =  149 bits (360), Expect = 6e-37
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 2/226 (0%)
 Frame = +2

Query: 92  RGEDTMHPLAVTLEDLYAGKTTKLQLSKNVICAHCKGVGGKPGSLIS-CKDCRGQGIKVS 268
           RG D +H   ++LED++ GK  KL+ ++N +C  C+G GGK  +    C  C G+G+K  
Sbjct: 116 RGSDVIHDYEISLEDMFKGKEVKLRATRNTLCPRCQGRGGKRFAKEKPCLSCDGKGVKQH 175

Query: 269 YQQIAPHMTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQK 448
            + + PH        C +C G+G +F              + E ++L   + +  ++N K
Sbjct: 176 LKHVGPHHVTNSQVICDTCNGKGVSFRGKDRCKHCKGSGTVPEQRMLSFFVNRSAKENDK 235

Query: 449 IYFRGEGDQQPDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGF-EFVAKHL 625
           I  RG  D+     PGDVI+ L QKPH  F+R GD+L  K +I+L EAL GF   +   L
Sbjct: 236 IIQRGMADEAYGITPGDVILQLHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTTL 295

Query: 626 DGRDLLIRHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDV 763
           DGR L      G+++ PGD   + GEGM        +G+ Y++ D+
Sbjct: 296 DGRGLEYVQPIGKILHPGDCLIIPGEGMYKDSKTDLRGDLYLEVDI 341


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score =  101 bits (243), Expect = 9e-23
 Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 12/236 (5%)
 Frame = +2

Query: 92  RGEDTMHPLAVTLEDLYAGKTTKLQLSKNVICAHCKGVGGKPG-----SLISCKDCRGQG 256
           RG      + + L   Y G +  L++     C+ C G G  P      ++ SC  C G G
Sbjct: 120 RGPSMEQIVQIHLSSFYTGGSFTLEIPVKRTCSVCSGQGFNPKYSADKAIESCPVCGGSG 179

Query: 257 IKVSYQQIAPHMTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMR 436
            +V    IAP   +Q    C +C G G T               + E+   ++ +  G  
Sbjct: 180 FRVIEHMIAPGFRQQMRMPCNACNGNGRTIKHKCPRCKGERVAEVVES--FDIKVPAGAP 237

Query: 437 DNQKIYFRGEGDQQPDTEPGDVIIVLQQKPHEK-FKRNGDNLIMKHEITLTEALCG-FEF 610
           +  +I FRG+ D+ P  E GD+I++L+    +  + R  ++L  K  I++ EAL G ++ 
Sbjct: 238 EGYRIGFRGKADEIPGMEAGDIIVILEAAGGDYGWTRKDNDLYRKETISVREALLGNWKR 297

Query: 611 VAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPIY-----KNLFEKGNFYVKFDV 763
             + LDG  + ++   GEV+ PG+ + V+ +GMPIY     K     G+ Y++++V
Sbjct: 298 KIQKLDGSFMEVKRSAGEVVHPGETERVKNQGMPIYNLHKGKTTSAHGSAYIEWEV 353


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +2

Query: 401 KILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHEIT 580
           +ILE+ ++ G +   KI F GEGD++PD    D+  VL +KPH  F R+GD+L M+ E++
Sbjct: 244 RILEIKVKPGWKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKPHPVFTRSGDDLRMQVELS 303

Query: 581 LTEALCGFEFVAKHLDGRDLLI-RHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKF 757
           L EAL GF      +DG+ L +   LP    +PG      G GMP+ KN  ++GN  ++ 
Sbjct: 304 LKEALLGFSKQISTIDGKKLKVSSSLP---TQPGYEITYPGFGMPLPKNPSQRGNMIIEC 360

Query: 758 DV 763
            V
Sbjct: 361 KV 362


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 9/232 (3%)
 Frame = +2

Query: 95  GEDTMHPLAVTLEDLYAGKTTKLQLSKNVICAHCKGVGGKPGSLIS-CKDCRGQGIKVSY 271
           GED    + +   +   G    L  S +  C+ C G G +PGS  S C  C+G G ++ +
Sbjct: 210 GEDIEASITIDFMEAVRGAKKDLSYSVSSTCSSCHGSGLQPGSHKSTCFACKGTGQRLHF 269

Query: 272 QQIAPHMTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKI 451
              + HM     + C SC G G T               + E K + + I  G+ DN  +
Sbjct: 270 IPPSFHM----QTTCDSCGGTGTTIPPNSACRSCMGSGTVRERKTVSIDIPPGIDDNTVL 325

Query: 452 YFRGEGDQ--------QPDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGFE 607
              G G+            + PGD+   +  + H  F R G N+    +I +T A  G  
Sbjct: 326 RVMGAGNDASTAKGGPNAKSRPGDLFATIHVRKHPFFVREGTNVTYNAKIPMTTAALGGT 385

Query: 608 FVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDV 763
                L G ++ +R  PG     GD   + G+G+    N    GNFYV F+V
Sbjct: 386 LRVPTLTG-NVDLRVSPG--TSTGDRITMAGKGIR-KVNTSRYGNFYVNFEV 433


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 275 QIAPHMTRQFHSRCPSCLGQGET 343
           ++ P+    FH+ CPSC  Q +T
Sbjct: 246 EVDPNEVHTFHATCPSCSHQCDT 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,738
Number of Sequences: 5004
Number of extensions: 63939
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)