Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2048
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain (...   230   7e-61
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...   210   1e-54
Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    97   2e-20
Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical pr...    37   0.014
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF016450-3|AAB65992.3|  811|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF016450-2|AAB65983.1|  545|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    28   6.4  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    28   6.4  
Z81125-6|CAI79225.1|  234|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown prote...    28   8.4  
AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin...    28   8.4  

>AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 19 protein.
          Length = 439

 Score =  230 bits (563), Expect = 7e-61
 Identities = 110/223 (49%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
 Frame = +2

Query: 98  EDTMHPLAVTLEDLYAGKTTKLQLSKNVICAHCKGVGGKPGSLISCKDCRGQGIKVSYQQ 277
           +DT+HPL VTLE+LY GKT+KL+LSK  +C  C+G GGK G    C  CRG+G+K   QQ
Sbjct: 140 QDTVHPLNVTLEELYVGKTSKLKLSKKALCKTCEGSGGKKGEKYKCDACRGRGVKTIVQQ 199

Query: 278 IAPHMTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYF 457
           I P M +Q    C +C G G                  N +KILEVH+  GM+ N KI F
Sbjct: 200 IGPGMLQQMQVHCDACKGSGGKVPAGDKCKGCHGEKYENVSKILEVHVLPGMKHNDKITF 259

Query: 458 RGEGDQQ-PDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGR 634
           +G+GDQ  PD EPGDV+IV+QQK H+ FKR+GD+L M  +++L EALCG+ F+ KHLDG 
Sbjct: 260 KGDGDQSDPDGEPGDVVIVIQQKDHDIFKRDGDDLHMTKKLSLNEALCGYNFLIKHLDGH 319

Query: 635 DLLIRHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDV 763
            L++    G+VIKPG ++ V G+GMP  K    KGN +V+F+V
Sbjct: 320 PLVLSSKQGDVIKPGVIRGVLGKGMPNKKYPELKGNLFVEFEV 362


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score =  210 bits (512), Expect = 1e-54
 Identities = 105/225 (46%), Positives = 137/225 (60%), Gaps = 1/225 (0%)
 Frame = +2

Query: 92  RGEDTMHPLAVTLEDLYAGKTTKLQLSKNVICAHCKGVGGKPGSLISCKDCRGQGIKVSY 271
           R + T+H L VTL+ LY G T KL++S+   C  CKG+GG  GS   C DCRG+GIKV  
Sbjct: 105 RVKPTVHNLRVTLDTLYKGVTKKLKISRTATCKGCKGLGGNEGSAKECSDCRGRGIKVRV 164

Query: 272 QQIAPHMTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKI 451
            ++ P M +Q  S C SC G+G TF E            + E +I+EV I  GM+D +K 
Sbjct: 165 IRMGP-MVQQMQSHCDSCNGEGSTFLEKDRCKKCNGKKQVKEDEIIEVGITPGMKDGEKF 223

Query: 452 YFRGEGDQQPDTE-PGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLD 628
            F G+GD+    E PGD ++VL +  HEKF R GDNLI++H I L+EALCGF      LD
Sbjct: 224 VFEGKGDEVIGIEKPGDFVVVLDEVEHEKFVRKGDNLIIQHNIDLSEALCGFVRTISTLD 283

Query: 629 GRDLLIRHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDV 763
           GR +  R LPGEVI   DVK +  EGMP+ +   +KG+  V+FDV
Sbjct: 284 GRTIFYRVLPGEVIAHADVKVIHNEGMPMRRASSDKGDLLVQFDV 328


>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 47/123 (38%), Positives = 73/123 (59%)
 Frame = +2

Query: 395 ETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKPHEKFKRNGDNLIMKHE 574
           E K+L V I+ G +   KI F  EGDQ P+  P D++ V++ KPH KFKR G ++    +
Sbjct: 193 EDKVLTVTIKPGWKSGTKITFPKEGDQHPNRTPADIVFVIKDKPHPKFKREGSDIKRVEK 252

Query: 575 ITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVK 754
           I+L  AL G + +   LDG D  ++    +VIKPG  + + G+G+P  K+   +G+  ++
Sbjct: 253 ISLKSALTGLDIMIPTLDGADYRLQ--LNDVIKPGTTRRLTGKGLPNPKSPSHRGDLIIE 310

Query: 755 FDV 763
           FDV
Sbjct: 311 FDV 313


>Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical
           protein T15H9.7 protein.
          Length = 249

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +2

Query: 386 VLNETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKPHEK 535
           ++ E K+LEV +E G  +  +  F GEG+   + +PGD+   ++ + H +
Sbjct: 200 LVQENKVLEVEVEVGADNGHQQIFHGEGEPHIEGDPGDLKFKIRIQKHPR 249


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 441 LSLIPFSMCTSKIFVSFKTFFPLHLEHLSFSLNVSP 334
           + LI +S+C   + VS K F  + + HL+F + V+P
Sbjct: 35  IELILYSICLYIVVVSLKIFVQVRMFHLNFIILVAP 70


>AF016450-3|AAB65992.3|  811|Caenorhabditis elegans Hypothetical
           protein B0238.13 protein.
          Length = 811

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 191 HCKGVGGKPGSLISCKDCRGQGIKVSYQQIAPHMTRQFHSRCP 319
           H K  GG P ++       G G  V +  ++PH  + FH   P
Sbjct: 519 HIKSFGGDPSNVTISGTSAG-GASVDFLSLSPHANKYFHKFIP 560


>AF016450-2|AAB65983.1|  545|Caenorhabditis elegans Hypothetical
           protein B0238.1 protein.
          Length = 545

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 191 HCKGVGGKPGSLISCKDCRGQGIKVSYQQIAPHMTRQFHSRCP 319
           H K  GG P ++       G G  V +  ++PH  + FH   P
Sbjct: 194 HIKSFGGDPSNVTISGTSAG-GASVDFLSLSPHANKYFHKFIP 235


>AL117206-4|CAB60447.1|  447|Caenorhabditis elegans Hypothetical
           protein Y67A10A.6 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 185 CAHCKGVGGKPGSLISCKDCRGQGIKVSYQQI 280
           C HCKG G KP     C  C G G   +Y +I
Sbjct: 259 CHHCKGGGKKP-----CTSCSGTGSVRNYTRI 285


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 65  LYSHPFQRGYQRNYQKFHQP 6
           +YS+P Q+GYQ+NYQ  + P
Sbjct: 246 VYSNP-QQGYQQNYQNLYTP 264


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 65  LYSHPFQRGYQRNYQKFHQP 6
           +YS+P Q+GYQ+NYQ  + P
Sbjct: 268 VYSNP-QQGYQQNYQNLYTP 286


>Z81125-6|CAI79225.1|  234|Caenorhabditis elegans Hypothetical
           protein T22A3.3b protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 112 SPCSDIRRFVCWENYKIAAQQKRNLCPL*RC 204
           SP + +R   CWE+Y    Q+  NL PL  C
Sbjct: 159 SPGTWVRCHYCWESYVKLCQRVANLEPLISC 189


>Z81125-5|CAB03381.2|  398|Caenorhabditis elegans Hypothetical
           protein T22A3.3a protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 112 SPCSDIRRFVCWENYKIAAQQKRNLCPL*RC 204
           SP + +R   CWE+Y    Q+  NL PL  C
Sbjct: 323 SPGTWVRCHYCWESYVKLCQRVANLEPLISC 353


>AF408760-1|AAO27839.1|  318|Caenorhabditis elegans unknown protein
           protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 112 SPCSDIRRFVCWENYKIAAQQKRNLCPL*RC 204
           SP + +R   CWE+Y    Q+  NL PL  C
Sbjct: 243 SPGTWVRCHYCWESYVKLCQRVANLEPLISC 273


>AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform a protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 402 FVSFKTFFPLHLEHLSFSLNVSP*PRQ 322
           F  F TF PL L HLS S ++ P PR+
Sbjct: 775 FSFFATFLPLSLSHLSMSYHL-PKPRE 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,660
Number of Sequences: 27780
Number of extensions: 374955
Number of successful extensions: 920
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)