Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2048
(768 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 24 1.4
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 3.1
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 4.1
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 4.1
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 4.1
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 4.1
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 5.5
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 5.5
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 5.5
M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee homeobox-... 22 7.2
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 22 7.2
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 24.2 bits (50), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 152 TTKLQLSKNVICAHCKGVGGK 214
+T L+L I HC+ VGGK
Sbjct: 35 STILRLDPKFIALHCQEVGGK 55
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.0 bits (47), Expect = 3.1
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 545 NGDNLIMKHEIT-LTEALCGFEFVAKHLDGRDLLIR 649
+ D++++ E + TEA+ EF+A+HL DL I+
Sbjct: 434 SSDSVLLSPEASKATEAV---EFIAEHLRNEDLYIQ 466
Score = 21.4 bits (43), Expect = 9.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 441 LSLIPFSMCTSKIFVSFKTFFPLHLEHLSFS 349
LSL+ F + SKI PL ++L F+
Sbjct: 273 LSLVVFLLLVSKILPPTSLVLPLIAKYLLFT 303
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 705 PSPCTHLTSPG 673
P+PCTH T+ G
Sbjct: 432 PNPCTHTTTNG 442
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 705 PSPCTHLTSPG 673
P+PCTH T+ G
Sbjct: 418 PNPCTHTTTNG 428
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 705 PSPCTHLTSPG 673
P+PCTH T+ G
Sbjct: 452 PNPCTHTTTNG 462
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 705 PSPCTHLTSPG 673
P+PCTH T+ G
Sbjct: 401 PNPCTHTTTNG 411
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = -1
Query: 627 SKCLATNSKPHNASVSVISCFI 562
+KC ATN + + +SC +
Sbjct: 563 TKCKATNEETYRGGKGALSCLL 584
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = -1
Query: 627 SKCLATNSKPHNASVSVISCFI 562
+KC ATN + + +SC +
Sbjct: 563 TKCKATNEETYRGGKGALSCLL 584
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 22.2 bits (45), Expect = 5.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = -1
Query: 627 SKCLATNSKPHNASVSVISCFI 562
+KC ATN + + +SC +
Sbjct: 563 TKCKATNEETYRGGKGALSCLL 584
>M29492-1|AAA27727.1| 74|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone H40. ).
Length = 74
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 613 NKFKTTQCFSKCD 575
NKFKTT+ S C+
Sbjct: 25 NKFKTTRYLSVCE 37
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 21.8 bits (44), Expect = 7.2
Identities = 8/40 (20%), Positives = 20/40 (50%)
Frame = +2
Query: 488 EPGDVIIVLQQKPHEKFKRNGDNLIMKHEITLTEALCGFE 607
E G + + PH++ G N + ++ + +++CG +
Sbjct: 247 ETGTIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSICGID 286
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,302
Number of Sequences: 438
Number of extensions: 4512
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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