Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2047
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 270 1e-73
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 87 3e-18
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 85 1e-17
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 80 3e-16
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 72 8e-14
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 62 6e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 56 7e-09
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 51 2e-07
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 29 0.94
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 2.2
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 3.8
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa... 27 3.8
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 6.6
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 6.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 8.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.8
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 270 bits (662), Expect = 1e-73
Identities = 124/178 (69%), Positives = 152/178 (85%)
Frame = +1
Query: 7 PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCN 186
PK +ENANILIANT MDTDK+KVFG+ ++VD+ K+AELE AE+EKMK KV KI +H N
Sbjct: 225 PKVMENANILIANTAMDTDKVKVFGARVRVDTTGKLAELERAEREKMKAKVEKIKSHNIN 284
Query: 187 VFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKL 366
FINRQLIYN+PEQLFADAG+M+IEHADF+GIERL LVTGGEI STFD P+ VKLGHCK
Sbjct: 285 CFINRQLIYNWPEQLFADAGIMSIEHADFDGIERLSLVTGGEIASTFDHPELVKLGHCKK 344
Query: 367 IEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPKV 540
IEE++IG++ +I+FSGV G ACTIV+RGAT Q++DE+ER++HDAL VL+ TV E +V
Sbjct: 345 IEEIIIGEDKMIKFSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRV 402
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/30 (53%), Positives = 25/30 (83%)
Frame = +2
Query: 662 PSAVADNAGYDSADLIARLRAHHSRGENTM 751
P+ +ADNAG+DS++L+A+L+A H G +TM
Sbjct: 443 PTILADNAGFDSSELVAQLKAAHYDGNDTM 472
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 87.0 bits (206), Expect = 3e-18
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 2/181 (1%)
Frame = +1
Query: 7 PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCN 186
P ++ENA I I P + K K + + S+++ L+ EKEK ++ + + N
Sbjct: 242 PHRIENAKIAILTCPFEPPKPKT-KHKLDITSVSEFEALQAYEKEKFQEMIKHVKDAGAN 300
Query: 187 VFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKL 366
+ I + + L + A+ IE + + T G IV F+ KLG +
Sbjct: 301 LVICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGSAGI 360
Query: 367 IEEVLIGD--ESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPKV 540
+ EV G + ++ A A T+ +RG+ + ++DEA+R+LHDALCV+ +++ +V
Sbjct: 361 VREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRV 420
Query: 541 I 543
+
Sbjct: 421 V 421
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 85.0 bits (201), Expect = 1e-17
Identities = 51/180 (28%), Positives = 85/180 (47%)
Frame = +1
Query: 4 QPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKC 183
QPK +N IL + ++ K + + ++VD + + + AE + K+ I+A
Sbjct: 233 QPKFFKNPKILCLDVELEL-KAEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGA 291
Query: 184 NVFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCK 363
V +++ I + Q FAD + + + R+ GG I ST + ++ LG C
Sbjct: 292 KVVLSKLPIGDLATQYFADRDIFCAGRVAADDLNRVVQAVGGSIQSTCSNIEEKHLGTCD 351
Query: 364 LIEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPKVI 543
EE IG + F G CT+++RG Q I E ERSLHDA+ ++ +K V+
Sbjct: 352 TFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALKNNLVV 411
Score = 34.7 bits (76), Expect = 0.014
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 662 PSAVADNAGYDSADLIARLRAHHSRGE 742
P + DNAG+DS +++ +LR H++GE
Sbjct: 451 PRQLCDNAGFDSTNILNKLRMQHAKGE 477
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 80.2 bits (189), Expect = 3e-16
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Frame = +1
Query: 7 PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCN 186
P ++E ANI + + K + + V+ ++ ++ E++ + + KI N
Sbjct: 227 PTRIEKANIALIQFQLSPPKPDMENQVV-VNDYRQMDKILKEERQYLLNMCKKIKKAGAN 285
Query: 187 VF-----INRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKL 351
V I R + + A +M I+ + + +E + TG + ++ +S + KL
Sbjct: 286 VILIQKSILRDAVNDLALHFLAKLKIMVIKDIERDEVEFICKSTGCKPIADIESFAEDKL 345
Query: 352 GHCKLIEEVLIGDESLIRFSGVA-LGSACTIVIRGATQQVIDEAERSLHDALCVLAATVK 528
GH L+EE E +++FSGV G +I+ RGA ++EAERSLHDALCV+ VK
Sbjct: 346 GHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIRCLVK 405
Query: 529 EPKVI 543
+ +I
Sbjct: 406 QRALI 410
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 72.1 bits (169), Expect = 8e-14
Identities = 48/184 (26%), Positives = 91/184 (49%), Gaps = 7/184 (3%)
Frame = +1
Query: 13 KVENANILIANTPMDTDKIKV-FGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNV 189
+V+NA I + + MD K K+ G + +D ++ ++ E ++V KIL NV
Sbjct: 233 RVQNAKIAVLD--MDLQKTKMALGVHVTIDDPDQLEKIREREVMITLERVKKILNAGANV 290
Query: 190 FINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVK------L 351
+ + I + + +AG MA+ E + R+ +G ++S+ + + + L
Sbjct: 291 ILTTKGIDDLCLKSIIEAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETFESSYL 350
Query: 352 GHCKLIEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKE 531
G + + + D+ I G S+ +IV+RG + +DE ERS+HD+L V+ T++
Sbjct: 351 GSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLES 410
Query: 532 PKVI 543
KV+
Sbjct: 411 GKVV 414
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 62.5 bits (145), Expect = 6e-11
Identities = 42/178 (23%), Positives = 84/178 (47%), Gaps = 1/178 (0%)
Frame = +1
Query: 10 KKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNV 189
+++EN I++ + P++ K + + I++ + E+E++K + I+A K ++
Sbjct: 229 RRIENPRIVLLDCPLEYRKGES-QTNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDL 287
Query: 190 FINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGH-CKL 366
I + + + + A + A+ R+ G IV+ + + +G C L
Sbjct: 288 VITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGL 347
Query: 367 IEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPKV 540
+GDE +G ACTI++RG ++ +I+E ER+L DA+ V PK+
Sbjct: 348 FYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKL 405
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 55.6 bits (128), Expect = 7e-09
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Frame = +1
Query: 7 PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHK-- 180
PK+V+NA ILI N ++ +K ++ S + + L +E++ + +K+ KI+ K
Sbjct: 220 PKQVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKFVDNKLRKIVELKKE 278
Query: 181 -CN-------VFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSP 336
C V IN++ I + A G+MA+ A +ERL L GG ++ D
Sbjct: 279 VCERDPTANFVIINQKGIDPLSLDVLAKNGIMALRRAKRRNMERLQLACGGVAQNSVDDL 338
Query: 337 DKVKLGHCKLIEEVLIGDESLIRFSGVALGSACTIVIRGATQQVIDEAERSLHDALCVLA 516
+ LG + E +G+E V + TI+I G I + + + D L +
Sbjct: 339 NPEVLGWAGSVYERTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVK 398
Query: 517 ATVKE 531
V++
Sbjct: 399 NAVED 403
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 531 FFYSSSKHAKRIME*TLSFVDNLL 460
FFYS+S+ +R++E FVDN L
Sbjct: 246 FFYSTSEQRERLVESERKFVDNKL 269
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 51.2 bits (117), Expect = 2e-07
Identities = 35/176 (19%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Frame = +1
Query: 19 ENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCNVFIN 198
+ A + + + P+D + + G T+ + + ++ + E+ ++ + +I V +
Sbjct: 235 KEAKVAVFSCPLDISQTETKG-TVLLHNAQEMLDFSKGEENLIESHIKEIYDAGVRVVVT 293
Query: 199 RQLIYNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEV 378
+ + ++ I + RL V G ++ P ++G ++E +
Sbjct: 294 SGNVNDLVLHYLNRFEILVIRVPSKFELRRLCRVVGATPLARMGVPMPEEMGSVDVVETI 353
Query: 379 LIGDESLIRFSGVA-LGSACTIVIRGATQQVIDEAERSLHDALCVLAATVKEPKVI 543
IG + + F V + TIV+RGAT+ +D+ ER++ D + ++ A VK+ ++I
Sbjct: 354 EIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKALVKDNRLI 409
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.7 bits (61), Expect = 0.94
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 1 HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHK 180
H+ K E T K+KV+G + ++I+ L + KEK KD ++ HK
Sbjct: 617 HKEAKSEIEKDSSKPTEDQESKLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALHK 672
Query: 181 CNVFIN 198
N +N
Sbjct: 673 ENTALN 678
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.2
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -2
Query: 452 PRITIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDT---ISPPVTKPSLS 282
P+IT + E ++ R+ S+ + SS S T S ES D S PVT +S
Sbjct: 540 PKITTIDGESPSSISSRLPSSNLEQGSS-----SSVTKSPESMPDPSAKASSPVTSKGVS 594
Query: 281 IPSKSACSIAITPAS 237
I KSA + TP S
Sbjct: 595 INEKSAVNNYATPLS 609
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -2
Query: 455 APRITIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTL-SGESNVDTIS--PPVTKPSL 285
AP + I + P S+P + + + PS SG V S PPV KPS+
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV 1099
Query: 284 SIPSKSACSIAITPASA 234
+ P S+A+ P A
Sbjct: 1100 AAPPVPKPSVAVPPVPA 1116
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -2
Query: 413 PEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSA 264
P + + +S+P+ +I+ ++ +S + + PP + S+ IP K+A
Sbjct: 100 PAEALTISTPVDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNA 149
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 398 KLSSPIRTSSINLQ*PSFTLSGESNV-DTISPPVTKPSLSIPSKSACS 258
K S + +S ++ TLS S V T S PVT S S+ KSA S
Sbjct: 194 KASKKLTSSPTSVASKKATLSSVSKVASTSSLPVTSVSASVDPKSAAS 241
>SPBC25H2.07 |tif11||translation initiation factor
eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +1
Query: 136 KEKMKDKVNKILAHKCNVFINRQLIYNYPEQLFADAGVMA----IEHADFEGIERLGLVT 303
K K K N+ N R+L Y Q++A M IE A F+G++RLG +
Sbjct: 3 KNKGKGGKNRRRGKNENENEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIR 62
Query: 304 G 306
G
Sbjct: 63 G 63
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 7 PKKVENANILIANTPMDTDKIKVFGST 87
P K E N++ AN + DK + FGS+
Sbjct: 118 PNKKEETNVVHANEDISLDKRQSFGSS 144
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 64 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 180
K+K G T++ D A VA K+ K K K+L AHK
Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.6
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Frame = -2
Query: 443 TIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSA 264
T+V + T + S+PI +SS+ T S N T T + S P S+
Sbjct: 3376 TVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSS 3435
Query: 263 ----CSIAITPASANNCSG*LYISCLLMKTLHLCAKXXXXXXXXXXXXXXSNSAILAIES 96
S IT +S N S + S +L + + + S+++ S
Sbjct: 3436 TVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTVITSSVVIGSS 3495
Query: 95 TLIVEPNTLILSVSI 51
+++ ++++ SVS+
Sbjct: 3496 SVLSYASSIVSSVSL 3510
Score = 25.4 bits (53), Expect = 8.8
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Frame = -2
Query: 443 TIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDT--ISPPVTKPSLSIPSK 270
T+V + T + S+PI +SS+ + T S N T S V S +I S
Sbjct: 3292 TVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS 3351
Query: 269 SA--CSIAITPASANNCSG*LYISCLLMKTLHLCAKXXXXXXXXXXXXXXSNSAILAIES 96
S S +T +S N S + S ++ + + + NS+ I S
Sbjct: 3352 SILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS-TPITS 3410
Query: 95 TLIVEPNTLILS 60
+ +V +T I S
Sbjct: 3411 STVVNSSTPITS 3422
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 379 LIGDESLIRFSGVALGSACTIV 444
LIGDESLI++S A C V
Sbjct: 261 LIGDESLIKYSAAAHTRICFAV 282
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.8
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 434 QAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSL---SIPSKSA 264
Q ++T ++P TSS L S S S + S +T SL SIPS S+
Sbjct: 186 QPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS 245
Query: 263 CSIAITPASANNCS 222
S + + + +++ S
Sbjct: 246 SSSSTSSSLSSSSS 259
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 410 EKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSACSI 255
+K IK + TSS N Q S+T G N + T PS+ IP+ A ++
Sbjct: 604 DKTIKTNQATSTSSSNTQEISYT--GTLNDNINEGLSTFPSIDIPASEADNV 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,148
Number of Sequences: 5004
Number of extensions: 50755
Number of successful extensions: 212
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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