Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2046
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    33   0.035
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    33   0.061
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    31   0.14 
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   7.0  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGVF-FRNGDEESMFSLGFIAKHVE 762
           GSD GGS R+PA Y G  G  P+ G  +  G+  F N    S  ++G  A +V+
Sbjct: 159 GSDTGGSIRLPAAYVGCVGFKPSFGRISRYGMLAFAN----SFDTVGIAANNVK 208


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGVFFR-NGDEESMFSLGFIAKHVEDL 768
           GSD+GGS R PA   G+FG  P+    + +G     +G E  +  +G + + V D+
Sbjct: 225 GSDIGGSIRSPAANNGLFGLRPSTLRLSRKGCQGAVSGQETILGVVGPLGRSVRDM 280


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGVFFRNGDEESMFS-LGFIAKHVEDL 768
           G+D+GGS R+P+ + G++   P+ G  +   V      +E + S +G +A+ ++D+
Sbjct: 227 GTDIGGSIRIPSCFQGLYALKPSTGRISYLNVTNSYSGQELIPSVIGPMARSLKDI 282


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 260 FAVKSVTTRN--YISIKL*EVL*VRPGRYHHPAYFC 361
           FA KS T  N  YIS+ L ++L   P    H  +FC
Sbjct: 279 FAAKSDTPVNLEYISVVLNQILDWTPVELRHSIFFC 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,543
Number of Sequences: 5004
Number of extensions: 69178
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)