Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2046
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106... 40 0.002
04_04_1341 - 32768785-32768847,32770469-32770582,32770809-327708... 37 0.016
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104... 37 0.016
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336... 36 0.027
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 34 0.15
12_02_0872 + 23884715-23885770 29 4.1
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 28 7.2
03_02_0878 + 12088119-12088233,12088511-12088608,12088689-120887... 28 9.6
>04_01_0102 +
1060539-1060657,1060752-1060904,1061478-1061728,
1061959-1062141,1062248-1062395,1062679-1062850,
1062971-1063105,1063210-1063356
Length = 435
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGV 699
G+D GGS R+PA YCG+FG P+ G + V
Sbjct: 133 GTDTGGSVRVPAAYCGIFGLRPSHGLVSAENV 164
>04_04_1341 -
32768785-32768847,32770469-32770582,32770809-32770858,
32770940-32771033,32771144-32771221,32771397-32771472,
32771557-32771651,32771748-32771927,32772491-32772802,
32773122-32773670
Length = 536
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGV 699
GSD GGS R PA +CG+ G PT G + G+
Sbjct: 216 GSDTGGSVRQPASFCGVVGLKPTYGRVSRFGL 247
>04_01_0101 +
1041755-1041864,1041950-1042102,1042174-1042424,
1042878-1043060,1043163-1043310,1043787-1043958,
1057226-1057366,1057478-1057624
Length = 434
Score = 37.1 bits (82), Expect = 0.016
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGV 699
G+D GGS R+PA YCG+FG + G + + V
Sbjct: 130 GTDTGGSVRVPAAYCGIFGLRTSHGLVSAQNV 161
>11_01_0441 -
3363069-3363137,3363273-3363430,3363549-3363613,
3363709-3363777,3363881-3363973,3364081-3364184,
3364327-3364410,3364486-3364693,3364809-3364880,
3365005-3365080,3365788-3365900,3366006-3366153,
3366996-3367073,3367968-3368097,3368296-3368486,
3368644-3368704,3368847-3368956,3369090-3369312
Length = 683
Score = 36.3 bits (80), Expect = 0.027
Identities = 22/54 (40%), Positives = 29/54 (53%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGVFFRNGDEESMFSLGFIAKHVED 765
G+D GGS RMPA CG+ G PT G + G+ N ++ G +A VED
Sbjct: 347 GADGGGSVRMPAALCGVVGLKPTAGRFSKDGLLPLNW---TVGMPGILAATVED 397
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGVFFRNGDEE 723
G+D GGS R+P+ CG+ G T G T++ G G E
Sbjct: 293 GTDGGGSVRIPSSLCGIIGLKTTYGRTDMTGALCDCGTVE 332
>12_02_0872 + 23884715-23885770
Length = 351
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCG-MFGHHPTPGSTNLRGVFFRNGDEESMFSLGFIAKHVEDLAPL 777
G + +TR+P CG + G +P +T+L G F ++FSL F+A + DL L
Sbjct: 138 GRGVARATRLPP--CGSVAGAYPAMVATHLFGAFVMLSANAAVFSLMFLAFNGADLLGL 194
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 386 LKGGPAVELY*ELRTYTQGEWHIYVVDVYGLQ*PLNTRWA--VNSSTHLSNKKRQCSVPW 559
+KG EL L TY WH++ +D YG+ N + V + T +N + + W
Sbjct: 319 VKGLDGFELLDTLLTYL---WHVHGIDYYGMSESTNAKGLRHVRADTKNANMDKSSAADW 375
>03_02_0878 +
12088119-12088233,12088511-12088608,12088689-12088795,
12088900-12088974,12089053-12089124,12089221-12089382,
12089476-12089550,12089635-12089706,12089813-12089884,
12090150-12090224,12090329-12090400,12090491-12090625,
12090712-12091187,12091270-12091779,12091876-12092111,
12092200-12092712
Length = 954
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 602 VIIRTLIVLSST*ITRAQSTAFFYCL-DEWMSSQPTW 495
V++ ++ V +S +T +Q T+ L D+W ++ PTW
Sbjct: 20 VLLLSVCVRASHAVTDSQDTSVLRALMDQWQNAPPTW 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,456,567
Number of Sequences: 37544
Number of extensions: 463349
Number of successful extensions: 965
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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