Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2046
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-16|CAB61089.1| 535|Caenorhabditis elegans Hypothetical... 50 2e-06
AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical ... 38 0.011
AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical ... 33 0.30
AL132860-10|CAB60525.1| 615|Caenorhabditis elegans Hypothetical... 32 0.53
AL132860-9|CAB60524.1| 647|Caenorhabditis elegans Hypothetical ... 32 0.53
AF045643-6|AAC02593.2| 570|Caenorhabditis elegans Hypothetical ... 31 1.2
U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical pr... 29 2.8
L23648-14|AAM48527.1| 573|Caenorhabditis elegans Dipeptidyl pep... 29 4.9
L23648-13|AAM48525.1| 740|Caenorhabditis elegans Dipeptidyl pep... 29 4.9
Z50028-2|CAA90337.1| 158|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 28 6.5
U39741-2|AAQ81278.1| 279|Caenorhabditis elegans Hypothetical pr... 28 6.5
U39741-1|AAA80429.2| 301|Caenorhabditis elegans Hypothetical pr... 28 6.5
DQ365984-1|ABD14369.1| 161|Caenorhabditis elegans F46F6.3 prote... 28 6.5
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 28 6.5
>AL132949-16|CAB61089.1| 535|Caenorhabditis elegans Hypothetical
protein Y53F4B.18 protein.
Length = 535
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRG-VFFRNGDEESMFSLGFIAKHVEDL 768
GSD+GGS RMPAF+ G+FG PTPG L G V G + M +G + + EDL
Sbjct: 227 GSDIGGSIRMPAFFNGVFGLKPTPGVIPLIGHVPEPTGYKTHMLRIGPMCRFAEDL 282
>AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical
protein Y41D4A.6 protein.
Length = 452
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGV 699
GSD GGSTR PA + G+FG PT G + G+
Sbjct: 147 GSDTGGSTRNPAAFNGIFGFKPTYGVLSRNGL 178
>AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical
protein Y56A3A.5 protein.
Length = 762
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGVF-FRNGDEESMFSLGFIAKHVED 765
G+DL GS R+PA +CG+ PT + + G +S GF ++VED
Sbjct: 378 GNDLVGSLRIPAAFCGLVSLKPTQDRLHESEMHPGLPGRGRLGYSCGFFTRNVED 432
>AL132860-10|CAB60525.1| 615|Caenorhabditis elegans Hypothetical
protein Y56A3A.12b protein.
Length = 615
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPT 672
GSDL GS R+PA +CG+ PT
Sbjct: 226 GSDLAGSLRIPAAFCGLVTLKPT 248
>AL132860-9|CAB60524.1| 647|Caenorhabditis elegans Hypothetical
protein Y56A3A.12a protein.
Length = 647
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFGHHPT 672
GSDL GS R+PA +CG+ PT
Sbjct: 258 GSDLAGSLRIPAAFCGLVTLKPT 280
>AF045643-6|AAC02593.2| 570|Caenorhabditis elegans Hypothetical
protein F58H7.2 protein.
Length = 570
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 604 GSDLGGSTRMPAFYCGMFG 660
G+D+GGS R PA +CG+ G
Sbjct: 230 GTDVGGSIRTPASFCGLAG 248
>U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical
protein B0218.2 protein.
Length = 571
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 592 LMITGSDLGGSTRMPAFYCGMFGHHPTPGSTNLRGV 699
L+ G D+GGS R+P Y G G P+ + RGV
Sbjct: 229 LLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGV 264
>L23648-14|AAM48527.1| 573|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 6, isoform c protein.
Length = 573
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -2
Query: 241 VIFRYQPTNCRYVQESNPNG----VRPQANRCR*IKRNNTRNSYILRQHDTLQIINKLTR 74
+ F N R E P+G RP++N NT Y+ QHD I +T
Sbjct: 179 IFFFDNDLNVRLASEEGPDGEMIYYRPRSNEGARTTEQNTWVEYLRIQHDDKAITMPITF 238
Query: 73 HKTND 59
K+N+
Sbjct: 239 DKSNN 243
>L23648-13|AAM48525.1| 740|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 6, isoform a protein.
Length = 740
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -2
Query: 241 VIFRYQPTNCRYVQESNPNG----VRPQANRCR*IKRNNTRNSYILRQHDTLQIINKLTR 74
+ F N R E P+G RP++N NT Y+ QHD I +T
Sbjct: 179 IFFFDNDLNVRLASEEGPDGEMIYYRPRSNEGARTTEQNTWVEYLRIQHDDKAITMPITF 238
Query: 73 HKTND 59
K+N+
Sbjct: 239 DKSNN 243
>Z50028-2|CAA90337.1| 158|Caenorhabditis elegans Hypothetical
protein F46F6.4b protein.
Length = 158
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 555 PGNLGRT*NDESSDDYRFRFGRIDSDAGI 641
PG LG +DESS+D + + ++ D GI
Sbjct: 23 PGQLGNPISDESSEDEQSQIRALEEDQGI 51
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 555 PGNLGRT*NDESSDDYRFRFGRIDSDAGI 641
PG LG +DESS+D + + ++ D GI
Sbjct: 23 PGQLGNPISDESSEDEQSQIRALEEDQGI 51
>U39741-2|AAQ81278.1| 279|Caenorhabditis elegans Hypothetical
protein F12D9.1b protein.
Length = 279
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 24 FSLIIVNSYIC*SFVLCLVNLLIICSV 104
++L +YIC S +LC+ L+++C V
Sbjct: 204 YTLFSSITYICGSIILCIAVLMVVCVV 230
>U39741-1|AAA80429.2| 301|Caenorhabditis elegans Hypothetical
protein F12D9.1a protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 24 FSLIIVNSYIC*SFVLCLVNLLIICSV 104
++L +YIC S +LC+ L+++C V
Sbjct: 226 YTLFSSITYICGSIILCIAVLMVVCVV 252
>DQ365984-1|ABD14369.1| 161|Caenorhabditis elegans F46F6.3 protein
protein.
Length = 161
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 555 PGNLGRT*NDESSDDYRFRFGRIDSDAGI 641
PG LG +DESS+D + + ++ D GI
Sbjct: 26 PGQLGNPISDESSEDEQSQIRALEEDQGI 54
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 555 PGNLGRT*NDESSDDYRFRFGRIDSDAGI 641
PG LG +DESS+D + + ++ D GI
Sbjct: 26 PGQLGNPISDESSEDEQSQIRALEEDQGI 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,729
Number of Sequences: 27780
Number of extensions: 398966
Number of successful extensions: 913
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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