Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2046
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.60 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 649 GMFGHHPTPGSTNL 690
           G +GHHP PG  +L
Sbjct: 279 GHYGHHPDPGEVDL 292


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 33  IIVNSYIC*SFVLCLVNLLIICSVSCCRNI*LFLVLFRLIYRHR 164
           ++ +S++    +LC  ++L +C++S  R +    V   LIY  R
Sbjct: 109 MLCDSWVSLDILLCTASILSLCAISIDRYL---AVTQPLIYSRR 149


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 711 ITEEHTS*VSAARCRVVPEHAAVKCR 634
           + EE ++        V+PEH AVK R
Sbjct: 225 VIEEQSTEQERLLLSVLPEHVAVKMR 250


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 87  LIICSVSCCRNI*LFLVLFRLI 152
           LI+C+V+ C ++   +V+F ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVV 337


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 87  LIICSVSCCRNI*LFLVLFRLI 152
           LI+C+V+ C ++   +V+F ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVV 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,575
Number of Sequences: 438
Number of extensions: 5195
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)