Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2043
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.22
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 27 1.2
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 27 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.5
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 27 2.0
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 4.7
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 6.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 6.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.2
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 8.2
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 29.9 bits (64), Expect = 0.22
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +3
Query: 9 QSVQIRLNTQAMQKIYETSPSQSE--YQHQMSLEP---GIPLPP*MTVHARMYSKRYSP 170
QS Q +TQ Q + P QS YQ ++P G+P PP V + Y + SP
Sbjct: 376 QSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPVQSTQYYQPSSP 434
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 1.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 277 SPKHAVPLVIHHRELMPYYQ 336
+P +V ++ HH EL+PY++
Sbjct: 294 TPSDSVAIIAHHAELIPYFR 313
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 264 KVPMPEVAWVNETFPLLASG-KLLDQDVLVHSLGCSVWNTFGHEQSFMAVVECPAP 100
K P P+ +++ P+L+ LD+DVLV +L + + G + A+++ P
Sbjct: 237 KNPQPDWNSISQVIPVLSKLIYTLDEDVLVDALWAISYLSDGANEKIQAIIDAGIP 292
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 336 TLTSSGAGIERPHTKASPVDKLGSSSRSALLTIS 437
++ SS +G+ TK+S + K+GSSS S L+ S
Sbjct: 3754 SIFSSSSGVPGLSTKSSSLGKIGSSSISLTLSSS 3787
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 167 PRLWTNTSWSNSLPLAKSGNVSFTQATSGIGTLATER 277
P LWTNT S+ L +A + +A G+ A +
Sbjct: 79 PSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRK 115
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 107 GHSTTAINDCSCPNVFQTLQPRLWTNTSWS 196
G S I DC P Q L LW + WS
Sbjct: 395 GTSNFGILDCIFPKGCQNLSQVLWGSIGWS 424
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.0 bits (52), Expect = 6.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 185 TSWSNSLPLAKSGNVSFTQATSGIGTLATERAPNTQYLW*FTTVN 319
T+ S+ LA + NVS + G G+LA PN + T VN
Sbjct: 691 TTKSSLTELAYNTNVSLPPRSPGTGSLAAGNLPNEKAPSLMTMVN 735
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +3
Query: 273 KEPQTRSTSGDSPP*INALLPTLTSSGAGIERPHTKASPVDKLGSSSR 416
KEP+ S + +PP N S + ++ P T +DK R
Sbjct: 548 KEPEESSITPTTPPSFNVGESLSRRSASPLQHPRTSPDMLDKTSPCKR 595
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 336 TLTSSGAGIERP-----HTKASPVDKLGSSSRSALLTISDALAINR*SS 467
TLTSS + RP H+ + K SSS+S+ +S A N SS
Sbjct: 382 TLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSS 430
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 8.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 84 DIRSDSGWFHKSSASPVCLIEFERF 10
+++ D W H S P+ + F+RF
Sbjct: 163 ELKEDQSWKHSSILRPLETLNFKRF 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,858
Number of Sequences: 5004
Number of extensions: 48834
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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