Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2043
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0506 - 18188785-18190599                                         37   0.008
01_01_0680 + 5217633-5219072                                           29   2.7  
08_01_0665 - 5745741-5746881,5747188-5747297                           28   4.7  
01_07_0067 - 40857544-40858164,40858265-40858370,40858541-408586...    27   6.2  
03_01_0035 - 322993-323280,323385-323528,324055-324180,324827-32...    27   8.2  

>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +3

Query: 66  PSQSEYQHQMSLEPGIPLPP*MTVHARMYSKRYSPGCGPIHPGPIAYRLLKVEMSHLPRQ 245
           P Q + Q Q+   P +P PP      R   K + PG   + P P+  R   V +   P+ 
Sbjct: 81  PQQQQQQQQLQAPPSLPPPP----PQRQPEKVHIPGVAAVPPAPVPDRPNPVHLPPQPQP 136

Query: 246 LQA*AP*PLKEPQTRSTSGD 305
             A AP P    Q +   GD
Sbjct: 137 PVAAAPPPPPHNQIQPGGGD 156


>01_01_0680 + 5217633-5219072
          Length = 479

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 297 SGDSPP*INALLPTLTSSGAGIERPHTKASPVDKLGSSSRSALLTISDALAI 452
           +GDSPP    LLP  T++ AG       A+P  +  S+S    L ++ ALA+
Sbjct: 13  AGDSPPPTALLLPRTTTTTAG-------AAPAPRRSSASSRLHLLLTAALAV 57


>08_01_0665 - 5745741-5746881,5747188-5747297
          Length = 416

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 382 LHRLINSGVPPDQLCSPY 435
           +HRLI SG+  D  CSPY
Sbjct: 212 VHRLIRSGMAVDPPCSPY 229


>01_07_0067 -
           40857544-40858164,40858265-40858370,40858541-40858659,
           40859195-40859392,40859659-40859724,40859798-40859916,
           40860295-40860580
          Length = 504

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 233 MRHFHF*QAVSYWTRMYWSTAWAVAFGIHSGMNS 132
           ++H H    V+Y TR++    W  AFG+ S M S
Sbjct: 358 LQHHHARDTVNYGTRLWQQVDWE-AFGMESSMLS 390


>03_01_0035 -
           322993-323280,323385-323528,324055-324180,324827-324882,
           325497-325517,327153-327420,327904-329787
          Length = 928

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 64  ARVRANISTKCPWSRAFHYRH 126
           AR  +++ST CPWS    Y H
Sbjct: 508 ARNNSDVSTSCPWSEEDLYPH 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,390,033
Number of Sequences: 37544
Number of extensions: 362575
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)