Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2041
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    29   2.4  
U13019-9|AAC24447.1|  434|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 439  RVVVKIGRRTVPQKTRKELRGHRDASSA 522
            RV+   GRR+ P  +R  LR HR+  +A
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRENDNA 1010


>U13019-9|AAC24447.1|  434|Caenorhabditis elegans Hypothetical
           protein T12A2.8 protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 161 YSHTVGIPHCDPLDDLITQYL 99
           Y+  VG P+CD + + IT YL
Sbjct: 276 YNFPVGFPNCDAVHNAITMYL 296


>Z49969-2|CAA90270.1|  564|Caenorhabditis elegans Hypothetical
           protein W01C9.2 protein.
          Length = 564

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
 Frame = +1

Query: 277 KASL--NPSPLKA*PFPPGRVLRKLKM*SLKTSKVENNRRVRDLHARSIVMLSVRLRVVV 450
           K+SL  NP+PL   P    +  R+  +   K  K++  RRV++L+ R      +R+R V+
Sbjct: 286 KSSLVKNPTPLIVRPGKKSKFNRRKNL--RKVGKIDRMRRVKNLNHRIRAQNRMRIRKVL 343

Query: 451 K---IGRR---TVPQKTRKELRG 501
                G R    +P K + +L G
Sbjct: 344 SKMIFGARDSDVMPNKQKPKLVG 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,407,952
Number of Sequences: 27780
Number of extensions: 199817
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)