Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2041
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   0.96 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.0  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 309 VTVPTRKGIKETQNVKSQDIKSG 377
           VTVP  KG+  + NV S+ I +G
Sbjct: 82  VTVPRYKGVPSSLNVISEKIGNG 104


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +1

Query: 100 KYCVIKSSRGSQWGIPTV 153
           ++C+ +++ G  WG+ T+
Sbjct: 496 QFCIFRTANGRGWGVKTM 513


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 389 LLLFSTFDVLRLHILSFLNTLPG 321
           +L F  F + R H+L     +PG
Sbjct: 24  ILYFIYFRISRRHLLELAEKIPG 46


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 234 SPALALLTHQEDRSHRPRKERICSL 160
           S  L L  H+E +  +P    +C+L
Sbjct: 382 STKLTLKRHKEQQHFQPLNSAVCAL 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,875
Number of Sequences: 438
Number of extensions: 2811
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)