Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2033
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       27   0.12 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -2

Query: 301 NVPVGCAPHGRIDNINSASIRCVCDDGYVSDY 206
           + P  C  HG   N+     RC C  G+   Y
Sbjct: 33  SAPSICGEHGHCVNLPGVGHRCQCQPGFTGKY 64


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 277 HGRIDNINSASIRCVCDDGYVSDYNTDTETPYC 179
           +G  ++I + S RC C DGY   Y   TE   C
Sbjct: 158 NGTCEDIGN-SHRCHCSDGYSGSY-CQTEINEC 188


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 566 QSVP-RRISQLPVVRRRYNNQDAWR*RPRTRDAYSSGRILLLGFGSRTRPIV*PQHGRVV 390
           +S+P R++ +L   +  + N D+     + RD+  +GRI     G++    +   H R  
Sbjct: 597 KSLPVRKLLELERAQHEFKNGDSSSLLDKMRDSSGAGRITCEKCGNKIDTSLFVDHIRQC 656

Query: 389 VG 384
           VG
Sbjct: 657 VG 658



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 335  SGP*ATAQKSETSFSFGQQPHAR 403
            SGP +T  KS     F + PH++
Sbjct: 1118 SGPGSTGSKSPPVAGFEESPHSK 1140


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -2

Query: 133  PRAPCADGQVRLDHPGLNDFYR 68
            P  PC  GQ   D    N +YR
Sbjct: 1099 PSQPCEPGQYVPDPHNCNAYYR 1120


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,864
Number of Sequences: 336
Number of extensions: 3807
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)