Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2033
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 2.6
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 29 2.6
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 2.6
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 2.6
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 29 3.5
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 29 3.5
AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical ... 29 3.5
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 29 4.6
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 4.6
U27312-6|AAA68250.1| 512|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 28 6.1
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 6.1
AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensor... 28 6.1
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 28 6.1
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 28 6.1
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 6.1
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 6.1
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 6.1
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 6.1
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 28 6.1
X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic int... 28 8.1
U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate fi... 28 8.1
U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate fi... 28 8.1
U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical p... 28 8.1
AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical... 28 8.1
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -2
Query: 370 GFALLCSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
G+A +C L G + + E C P C + N CVCDDG+ D
Sbjct: 279 GYACICKPLWTGRNCENPVPEACT-PSPCLNGTCVLNDQYNKFTCVCDDGFFGD 331
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 286 CAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRP 173
C PHG+ I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 286 CAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRP 173
C PHG+ I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 286 CAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRP 173
C PHG+ I+ + +C C GY D N + C P
Sbjct: 2601 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 2637
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 286 CAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRP 173
C PHG+ I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 286 CAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRP 173
C PHG+ I+ + +C C GY D N + C P
Sbjct: 3185 CDPHGKCIEISKYAYKCECGVGY-RDINPQSPGKKCLP 3221
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 295 PVGCAPHGRIDNINSASIRCVCDDGYVSDY 206
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 295 PVGCAPHGRIDNINSASIRCVCDDGYVSDY 206
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 295 PVGCAPHGRIDNINSASIRCVCDDGYVSDY 206
P CA G + +N IRC C +G+ DY
Sbjct: 413 PTTCANGGTCEGVNGV-IRCNCPNGFSGDY 441
>AF016668-6|AAB66090.1| 275|Caenorhabditis elegans Hypothetical
protein F36H9.2 protein.
Length = 275
Score = 29.1 bits (62), Expect = 3.5
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 6/119 (5%)
Frame = -2
Query: 355 CSCLRPGLVTQLNMYEDCNVPVGCAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCR 176
C R GLV+ + + CNV P D + +A C + +V D N +CR
Sbjct: 68 CQTNRKGLVSCVCSTDMCNVDTFSIP---TDIVLTAPPTIKCYNKFVDDDNF-CFGQFCR 123
Query: 175 ------PRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYRRHFRLEDICVIDPCSVD 17
P DV SFFP C+D + D +N Y + C + C+ D
Sbjct: 124 YSRQLVPNDFGDVQIS-SFFPERGCSDLEYNHDLASMNVCYTNDEMIVCQCNTEFCNKD 181
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = -2
Query: 247 SIRCVCDDGYVSDYNTDTETPYCRPRTVRDVMHDESFFPRAPCADGQVRLDHPGLNDFYR 68
+ C+C DGY D P R V + + ++ P + C + Q + L F R
Sbjct: 469 TFECLCKDGYEGD-------PSSECRDVNECKNPDACGPNSQCTNTQGGYECECLAGFER 521
Query: 67 ----RHFRLEDICVIDPC 26
H D C ++PC
Sbjct: 522 IAEGAHCTDRDECAVEPC 539
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -2
Query: 307 DC-NVPVGCAPHGRIDNINSASIRCVCDDGYVSDYNTDTETPYCRPRTVRDVMHDESFFP 131
DC ++P CA + DN + C CD GY+ D C P V+ D P
Sbjct: 2066 DCISLPSLCADKAKCDNSTRS---CECDAGYIGDGYV------CSPHPQDCVLRDNLCSP 2116
Query: 130 RAPC 119
A C
Sbjct: 2117 EAVC 2120
>U27312-6|AAA68250.1| 512|Caenorhabditis elegans Hypothetical
protein F26A1.3 protein.
Length = 512
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 277 HGRIDNINSASIRCVCDDGYVSDYNTDTE 191
HGR NI++ ++RC+ DD D D +
Sbjct: 166 HGRFGNIHTINVRCMPDDETNEDEEKDKD 194
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 16 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 47
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 152 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 183
>AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform j protein.
Length = 255
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 193 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 224
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 201 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 232
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 201 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 232
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 201 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 232
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 193 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 224
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 205 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 236
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 307 DCNVPVGCAPHGRIDNINSASIRCVCDDGYVSD 209
+C+ C P+ R N S +CVCD G+ +D
Sbjct: 205 ECDNGAVCGPNARCVN-EIGSFQCVCDAGFSTD 236
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 493 DGQEH-ETLIRAGESYCLA-LDRERARSCNPNTGVWLLAETETGFALLCSC 347
+G+E E + AG+ YC +D R C G W L ET + C+C
Sbjct: 439 EGEEDAERGLVAGKCYCKTNVDGNRCDRCK--NGYWNLTETNVDGCVACTC 487
>X78553-1|CAA55296.1| 543|Caenorhabditis elegans cytoplasmic
intermediate filamentprotein protein.
Length = 543
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 17 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 127
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-2|AAK68314.1| 526|Caenorhabditis elegans Intermediate
filament, b protein2, isoform c protein.
Length = 526
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 17 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 127
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U49831-1|AAA93405.1| 543|Caenorhabditis elegans Intermediate
filament, b protein2, isoform a protein.
Length = 543
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 17 VHRTRVDHANVFESKVSAVKIIESRMIQTNLAVCARR 127
+ TRVD +F+SK+SAV ES ++ N A R+
Sbjct: 257 IQTTRVDLETIFQSKISAV---ESSIVSKNEAAVFRQ 290
>U29377-10|AAA68717.1| 140|Caenorhabditis elegans Hypothetical
protein K05F1.10 protein.
Length = 140
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 193 ETPYCRPRTVRDVMHDESFFPRAPCADGQVR 101
E + P + + H + +FPR C DG VR
Sbjct: 73 ENLFSPPHCLNHLHHAKCYFPRCVCNDGYVR 103
>AF016448-17|AAB65962.1| 656|Caenorhabditis elegans Hypothetical
protein F41E6.14 protein.
Length = 656
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 479 VFLAVIATHLDY-CIFVEQLA-VG*SFAAQIAITVCGARRQSFVTFVCIAF 625
+FLAV+ T L +F E L S A I +CG SF+TF +AF
Sbjct: 236 IFLAVLTTVLILPWMFGEHLTRFAMSICAAILCLLCGRLENSFLTFPPLAF 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,198,611
Number of Sequences: 27780
Number of extensions: 370629
Number of successful extensions: 1131
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -