Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2030
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347     30   1.7  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    30   1.7  
02_04_0275 - 21469391-21470650                                         30   1.7  
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128...    29   4.0  
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071...    29   4.0  
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    29   4.0  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    28   5.3  
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708...    28   7.0  
03_05_0576 + 25765137-25766420                                         28   7.0  
07_03_0305 - 16475127-16476017,16476058-16478067                       27   9.3  

>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
          Length = 137

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 46  ASLAVVAFAKEEKGTPKAVEEKKQDKR 126
           ASL  V  AKEEK   K  EEKK DK+
Sbjct: 65  ASLLSVGPAKEEKKEEKKPEEKKDDKK 91


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 3   ASFGDHNE-VHGYFGGIVGRGCLCQGG 80
           A   +H++ + GYF  I+G  CLC GG
Sbjct: 247 ACISEHSKCMDGYFAPILGYNCLCDGG 273


>02_04_0275 - 21469391-21470650
          Length = 419

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/42 (26%), Positives = 27/42 (64%)
 Frame = +2

Query: 422 SRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPSRNTSNTQ 547
           +R+T+P+  R  +P R +  +L  + +KR+ P P + +++++
Sbjct: 183 ARSTAPMAPRVNFPQRTRTQFLPSSGVKRRMPSPPQVSASSE 224


>11_01_0154 +
           1281434-1281725,1281923-1281987,1282112-1282175,
           1282303-1282449,1282583-1282677,1284358-1284465
          Length = 256

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 112 SSLRLPSVCLSPPWQRQPRPTMPPK*PCTS 23
           +++  PS+  S P  R+P   +PP  PC+S
Sbjct: 3   AAVATPSLLFSSPTPRRPSSCLPPPPPCSS 32


>06_03_0079 -
           16301056-16301611,16301745-16301906,16306776-16307134,
           16307372-16307884
          Length = 529

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 30  HGYFGGIVGRGCL--CQGGERHTEGSRREETRQKG 128
           HGY GG  GRG      GG +  E + R E R +G
Sbjct: 335 HGYTGGADGRGQYRGSDGGRKDGEATPRREIRVRG 369


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 403 PSLPPQQF*CARGVHDDRGGSRLRWQL 323
           P LPP+   C   VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 401 RCLFRIQSRNTSPIPSRRKYPMR*KCPYLSPTPLKRKFPLPS 526
           +CL  +   +  P+P  R +P   + P   PTP+   +P P+
Sbjct: 37  KCLMCVCDVDPHPLPPSRHHPPPPEEPEPEPTPVNHHYPPPT 78


>06_03_1097 -
           27570037-27570262,27570575-27570730,27570763-27570881,
           27572154-27572236,27574991-27575041,27575218-27575674,
           27576139-27576228,27576672-27576701
          Length = 403

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 142 LCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTM 47
           L HR P  L  S R   +  S  WQ+QPR  M
Sbjct: 301 LVHRLPQALRFSNRFSCILSSARWQQQPRDGM 332


>03_05_0576 + 25765137-25766420
          Length = 427

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 94  SVCLSPPWQRQPRPTMPP 41
           +V +SPP Q +PRP +PP
Sbjct: 98  AVSVSPPTQPRPRPELPP 115


>07_03_0305 - 16475127-16476017,16476058-16478067
          Length = 966

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 82 SPPWQRQPRPTMPPK*PC 29
          SPP Q  P P +PP  PC
Sbjct: 26 SPPPQTAPAPALPPSNPC 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,888
Number of Sequences: 37544
Number of extensions: 265244
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)