Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2030
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 380 KLLRW*RRCLFRIQSRNTSPIPSRRKYPMR 469
           K L W ++ +F  ++   +P+ S +KY +R
Sbjct: 80  KFLWWYKQGMFLSRNAIFTPLNSEQKYEVR 109


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 380 KLLRW*RRCLFRIQSRNTSPIPSRRKYPMR 469
           K L W ++ +F  ++   +P+ S +KY +R
Sbjct: 80  KFLWWYKQGMFLSRNAIFTPLNSEQKYEVR 109


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 118 LVSSLRLPSVCLSPPWQRQPRPTMP 44
           LVS++R P+    PP    P P +P
Sbjct: 397 LVSAVRSPAGGQLPPSAGAPMPPIP 421


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 412  EQAPSLPPQQF*CA 371
            E  PS+PP+   CA
Sbjct: 1108 EDVPSIPPEDVRCA 1121


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 412  EQAPSLPPQQF*CA 371
            E  PS+PP+   CA
Sbjct: 1104 EDVPSIPPEDVRCA 1117


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = -2

Query: 465 IGYFLLDGIGDVFLDCIRNRHLL 397
           +G++ ++GIG  F+  + +R+++
Sbjct: 256 VGFYEVEGIGYDFIPTVLDRNVI 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,855
Number of Sequences: 438
Number of extensions: 2853
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)