Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2029
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0101 - 766382-767487,767599-767756,767900-768615                 35   0.054
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090...    28   8.1  
01_04_0013 + 15081879-15082370,15093535-15094050                       28   8.1  

>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 14/63 (22%), Positives = 35/63 (55%)
 Frame = +2

Query: 20  KNNSADIALYDHSIYSCIIPLDNSINRILMNTYIIICSVVIHIYFNVYICNYISVQICMY 199
           K   A+IA+ D   +SC +  D S N ++  TY+++ + ++ + +   +C ++   + ++
Sbjct: 246 KERIANIAIIDFYFWSCFLLGDRSHNNLIY-TYMVVDTALLILKWTAVLCRFVLAPLAVF 304

Query: 200 WFM 208
            F+
Sbjct: 305 IFL 307


>01_07_0106 -
           41107673-41107942,41108362-41108574,41108877-41109041,
           41109431-41109649,41110205-41110324,41110427-41110489,
           41111034-41111606,41111691-41111858,41112414-41112495,
           41112667-41112743,41113031-41113101,41114315-41114363
          Length = 689

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -3

Query: 552 NLIGLGNKYFGSKLVIPLYSTKQLGQILARSQNCISLRSGALMAYLKGIYVD 397
           +L+   N+Y   K  I +  T   G +  R +NCI   +     +LKGI  D
Sbjct: 28  HLVNKSNEYVAFKNYIVMLDTYLYGNLTRRLENCI-FNARLKQHHLKGIVFD 78


>01_04_0013 + 15081879-15082370,15093535-15094050
          Length = 335

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 682 MLSVLDALLTQTAN*YVQFNFTSDESASKNSFKPKNY 572
           +LS  D+++ +    Y    F +DE   K  F P NY
Sbjct: 106 LLSFTDSIIDRKGRPYYGLAFPADEDTGKGGFVPFNY 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,634,902
Number of Sequences: 37544
Number of extensions: 282703
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)