Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2028
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750     29   4.3  
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    29   4.3  
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    28   5.6  
01_05_0479 + 22600823-22602478                                         28   5.6  

>11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750
          Length = 422

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 640 FSINVQIVCGPQIEIYDIVVQWPGSV 563
           +S+ +Q V  P +   DIV  WPGS+
Sbjct: 202 YSMVLQAVISPDMRFMDIVTGWPGSM 227


>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 649 QGWFSINVQIVCGPQIEIYDIVVQWPGSVH 560
           +G  + NV +VC   +    ++  WPGSVH
Sbjct: 624 KGMTTQNVMVVCDFDMRFTFVLAGWPGSVH 653


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 640 FSINVQIVCGPQIEIYDIVVQWPGSV 563
           +SI +Q V GP     D+ + WPGS+
Sbjct: 677 YSITLQGVVGPDGTFTDVCIGWPGSM 702


>01_05_0479 + 22600823-22602478
          Length = 551

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 640 FSINVQIVCGPQIEIYDIVVQWPGSV 563
           +SI +Q V GP     D+ + WPGS+
Sbjct: 370 YSITLQGVVGPDGAFTDVCIGWPGSM 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,542
Number of Sequences: 37544
Number of extensions: 184221
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)