Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2021
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    28   0.93 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.6  

>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 177 MLHYGKKTLKDLQHTLALSKS*YKLHNSISQNIYHHL 287
           M H     LKDLQ+ +A   S Y       QN YHH+
Sbjct: 76  MTHDVTTNLKDLQNFMASYSSSYDQLLYFRQNYYHHI 112


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +3

Query: 84  PDELTTIELKQWAQSDFKNNKHHTDETTIKIMLHYGKKTLKDLQHTLALSKS*YKLH 254
           PDE T  EL    +  F+N+    +   I  +L  GKK L        ++ + Y  H
Sbjct: 155 PDEETAKELNTELKGKFENSLLSFESFDIANVLKAGKKLLGSASRDYDVNPANYSTH 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,601
Number of Sequences: 5004
Number of extensions: 36007
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)