Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2021
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636...    29   2.2  
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823...    28   3.8  
04_04_0340 + 24517562-24520318                                         27   6.6  
04_01_0240 + 3137859-3138461                                           27   6.6  

>02_05_0587 +
           30162806-30163183,30163315-30163478,30163571-30163654,
           30163737-30163794,30164092-30164145,30164244-30164309,
           30164310-30164381,30164547-30164627,30165361-30165533,
           30165916-30166018,30166148-30166279,30166432-30166554,
           30166898-30167002,30167397-30167722,30167919-30168258,
           30169973-30170113,30170589-30170801,30170901-30171119,
           30171272-30171619,30171711-30172043,30172548-30172601
          Length = 1188

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 12  LLQFLLRQEVLKLYRDIFRT--IRLVPDELTTIELKQWAQSDFKNNKHHTDETTIKIM 179
           LL+ L R   +   R ++RT  +  V DE  T+E K+  +SD+  ++  TD   ++++
Sbjct: 475 LLKQLARDLCISERRILYRTQYVVFVADEAQTVEEKEIDKSDYNLSRQATDARRLEVV 532


>04_04_1704 - 35481041-35481461,35481682-35481810,35482291-35482397,
            35482515-35482583,35482825-35482936,35483013-35483131,
            35483211-35483291,35483629-35483700,35484039-35484239,
            35484442-35484528,35485284-35485523,35485991-35486455,
            35487434-35487556,35487643-35487769,35487851-35487919,
            35488061-35488189,35488628-35488722,35488808-35488876,
            35489332-35489443,35489545-35489663,35489753-35489833,
            35490898-35490969,35491052-35491267,35491524-35491601,
            35491694-35491831,35492403-35492414,35492639-35492872,
            35493076-35493130,35493222-35493352,35493813-35494546,
            35494613-35494820
          Length = 1634

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 339  IATCYNVKPQKIYKQPILNDDIYFDLLNCVVYISFYLKQVYVAN 208
            + TC  ++ +KIYKQ I    ++     C     FY + +Y+ N
Sbjct: 1379 LVTCGTIE-EKIYKQQIFKGGLFRTATECKEQPQFYNQDLYLQN 1421


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 51  YRDIFRTIRLVPDELTTIELKQWAQSDFKNNKHHTDETTIKIMLHYGKKTLKDLQH 218
           Y ++ +T     + LTT++L QW  + +    HH +    K +     K+ K L++
Sbjct: 601 YVELNKTWFSEKNRLTTLQLGQWHDASYDPRAHHVEINNAKFLKQV--KSCKQLKY 654


>04_01_0240 + 3137859-3138461
          Length = 200

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 161 NYNQNHVALWKKNTKGFATY-TCFK*KLI*TTQFNKSK 271
           +YN + V LW + T   A++ T F  K++ +   NKSK
Sbjct: 85  SYNHSSVPLWDRTTNELASFATKFTFKIVLSDYKNKSK 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,866
Number of Sequences: 37544
Number of extensions: 178246
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)