Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2021
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098985-3|AAC67421.1|  358|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF098985-3|AAC67421.1|  358|Caenorhabditis elegans Hypothetical
           protein C08G5.3 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 108 LKQWAQSDFKNNKHHTDETTIKIMLHYGKKTLKDLQHTLALSKS*YKLHNS 260
           L +WA  D KN+K  T   T         K + D + +  LSK    + NS
Sbjct: 214 LGEWANEDEKNSKSETQHLTGYFRTIGSMKYVNDKEKSFVLSKFHESIDNS 264


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 504 YLLFLMLCWLAFFLNEYLRFQINY 433
           YLL ++    AFFLN Y+ F I Y
Sbjct: 9   YLLSILFATAAFFLNCYILFSIFY 32


>AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical
           protein K03H6.4 protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 248 FILAFT*SKCMLQIL*CFFSIVQHDFDCSFICMMFIVLEVRLSPLLKFDC 99
           F+L F  +K +L I    +S++      +F+CM  +  E+R   +  F C
Sbjct: 237 FMLVFVENKSLLLIS-ALYSLIMFKSIANFLCMFLVYHEIRQIFVYIFSC 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,951
Number of Sequences: 27780
Number of extensions: 197186
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)