Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2019
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 121 6e-29
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 71 1e-13
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 66 2e-12
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 63 2e-11
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 48 7e-07
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 46 3e-06
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 46 4e-06
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 45 7e-06
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 32 0.049
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 31 0.15
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 30 0.20
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.20
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 27 1.4
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 1.9
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 26 4.3
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 25 5.7
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 9.9
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 9.9
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 9.9
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 25 9.9
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 121 bits (292), Expect = 6e-29
Identities = 70/177 (39%), Positives = 101/177 (57%), Gaps = 11/177 (6%)
Frame = +1
Query: 55 VAASIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTED-----------AARGLD 201
V A+I+++LKQ + S+S + +ES+EV QCI+ +F++ E+ A +
Sbjct: 6 VTAAIIDYLKQAITTGSISEEEKESLEVAAQCIQDSFKIKPEEIKPKSGDRLVAAFEEYE 65
Query: 202 LLQLVRQRLGPPANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAA 381
L V + NK EAE+LK EGN + A+ Y +AL+ YT+AIEIDP + VYY NRAA
Sbjct: 66 KLHPVEEDSTAHVNKEEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAA 125
Query: 382 AHFRLCDPEAAVSDCTTXLALQPDYSKAYGRLGLALTGLERHCEARAVYARAGQLDP 552
A+ +L E AV D T L+L P +++A+GRLG A L A Y + DP
Sbjct: 126 AYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLDFDP 182
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 70.9 bits (166), Expect = 1e-13
Identities = 37/101 (36%), Positives = 57/101 (56%)
Frame = +1
Query: 250 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCT 429
EA LKNE N+ +K +A++ YT+AIE+D NA+ Y NR+ AH + D A++D +
Sbjct: 4 EALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDAS 63
Query: 430 TXLALQPDYSKAYGRLGLALTGLERHCEARAVYARAGQLDP 552
+ P+Y+KAY R A + + EA + +A L P
Sbjct: 64 KAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAP 104
Score = 46.0 bits (104), Expect = 4e-06
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = +1
Query: 286 MKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTXLALQPDYSKA 465
+K+E Y A+ ++AIE DP A Y RA AH + P+ AV D LAL P A
Sbjct: 50 LKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAA 109
Query: 466 YGRL 477
+L
Sbjct: 110 RKKL 113
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 66.5 bits (155), Expect = 2e-12
Identities = 35/92 (38%), Positives = 51/92 (55%)
Frame = +1
Query: 253 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 432
AE LK +GN + Y A++ +T+AI +D RN + Y NR+A + D A+ D T
Sbjct: 2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATK 61
Query: 433 XLALQPDYSKAYGRLGLALTGLERHCEARAVY 528
L+PD++K + R G AL GL AR+ Y
Sbjct: 62 CTELKPDWAKGWSRKGAALHGLGDLDAARSAY 93
Score = 58.8 bits (136), Expect = 5e-10
Identities = 33/103 (32%), Positives = 56/103 (54%)
Frame = +1
Query: 241 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVS 420
+KAE R+K GNEL K+ + A+++YT + P + + NRAAA+ ++ P +
Sbjct: 397 DKAEESRVK--GNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIR 454
Query: 421 DCTTXLALQPDYSKAYGRLGLALTGLERHCEARAVYARAGQLD 549
DC + L P+++KAY R AL L+ + + A ++D
Sbjct: 455 DCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497
Score = 35.5 bits (78), Expect = 0.005
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +1
Query: 238 ANKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAV 417
A K +A++ K GNE K + A+E+Y +A + ++ Y N AAA+F + +
Sbjct: 260 ALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWD-TYKDITYLNNLAAAYFEADQLDDCI 318
Query: 418 SDCTTXL----ALQPDY---SKAYGRLG 480
C + L+ D+ +KA GRLG
Sbjct: 319 KTCEDAIEQGRELRADFKLIAKALGRLG 346
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 63.3 bits (147), Expect = 2e-11
Identities = 40/102 (39%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Frame = +1
Query: 256 ERLKNEGNELMKAERYNEALEKYTRAIEIDPRN----AVYYCNRAAAHFRLCDPEAAVSD 423
E KN+GN+L + Y +A EKY+ A++IDP N A Y NRA RL PE A+SD
Sbjct: 224 ENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSD 283
Query: 424 CTTXLALQPDYSKAYGRLGLALTGLERHCEARAVYARAGQLD 549
LA+ Y K A LE+ EA A +LD
Sbjct: 284 SDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELD 325
Score = 58.0 bits (134), Expect = 9e-10
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = +1
Query: 253 AERLKNEGNELMKAERYNEALEKYTRAIEI--DPRNAVYYCNRAAAHFRLCDPEAAVSDC 426
AE+ K GN K ++Y EA++ YT AI++ D A+YY NRAA + ++ + E A+ D
Sbjct: 23 AEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDA 82
Query: 427 TTXLALQPDYSKAYGRLGLALTGLERHCEARAVYARAGQ 543
++PD K R+ A GL EA VY + Q
Sbjct: 83 KQSDRIKPDVPKTQSRIRQAYEGLSILNEAE-VYLKNKQ 120
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 48.4 bits (110), Expect = 7e-07
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +1
Query: 253 AERLKNEGNELMKAERYNEALEKYTRAI-----EIDPRNAVYYCNRAAAHFRLCDPEAAV 417
A+ + GNE ++RY +A E YT+A+ + D A Y NRAA + + +
Sbjct: 64 AQNFREHGNECFASKRYKDAEEFYTKALAQKCGDKDIEIACY-SNRAACNLLFENYRQVL 122
Query: 418 SDCTTXLALQPDYSKAYGRLGLALTGLERHCEAR 519
+DC L ++KAY R AL L+R+ EA+
Sbjct: 123 NDCAQVLQRDSTHAKAYYRSAKALVALKRYDEAK 156
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 46.4 bits (105), Expect = 3e-06
Identities = 28/88 (31%), Positives = 43/88 (48%)
Frame = +1
Query: 253 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 432
A LK GN+ + Y A++ YT+AI + +++ NRAA + + D E + D +
Sbjct: 151 AAELKTLGNKAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAACYAAIGDFEQVIKDTSE 209
Query: 433 XLALQPDYSKAYGRLGLALTGLERHCEA 516
L+L Y KA R A L + EA
Sbjct: 210 ALSLDSSYVKALNRRSAAYEQLGKLDEA 237
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 46.0 bits (104), Expect = 4e-06
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Frame = +1
Query: 133 EVGVQCIETAFELTTEDAARGLDLLQLVRQRLGPPANKAEAERLKNEGNELMKAERYNEA 312
++G C + + T +D A +Q + + L A+ +A+ G + ++YN+A
Sbjct: 551 QLGWLCHQQSSSFTNQDLA-----IQYLTKSL--EADDTDAQSWYLIGRCYVAQQKYNKA 603
Query: 313 LEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTXLALQPDYSKAYGRLGLALT 492
E Y +A+ D RN ++C+ ++++ + A+ + + L P S+ + LG
Sbjct: 604 YEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNPYISEVWYDLGTLYE 663
Query: 493 GLERH-CEARAVYARAGQLDP 552
+A Y RA +LDP
Sbjct: 664 SCHNQISDALDAYQRAAELDP 684
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 304 NEALEKYTRAIEIDPRN 354
++AL+ Y RA E+DP N
Sbjct: 670 SDALDAYQRAAELDPTN 686
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 45.2 bits (102), Expect = 7e-06
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Frame = +1
Query: 238 ANKAEAERLKNEGNELMKAERYNEALEKYTRAIEI-------DP------RNAVYYCNRA 378
A + ++K NE K ++Y EA + Y A+++ +P +V CNRA
Sbjct: 57 ALSTQVNKMKQTANEAFKRKKYEEAKKLYGLALQLALNRCTWEPSILTREEASVMLCNRA 116
Query: 379 AAHFRLCDPEAAVSDCTTXLALQPDYSKAYGRLGLALTGLERHCEARAV 525
AA L A++D L ++ +Y K Y R AL + R EA+ V
Sbjct: 117 AAEIALSQFPEALADANAALKIRNNYGKCYYRKAKALEAMHRIEEAKQV 165
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 32.3 bits (70), Expect = 0.049
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 244 KAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNA 357
+A R+ N+ +L + + Y +A++ Y +AI+ DP+NA
Sbjct: 631 QAREFRVHNDREKLKRQKLYIKAIQSYDQAIKFDPKNA 668
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 274 GNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCD 402
G E + E++ T A+E +P N N A F+LC+
Sbjct: 751 GRESKNVDYLKESVRYATLALEKNPENPSLLFNVAFVQFQLCE 793
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 30.7 bits (66), Expect = 0.15
Identities = 21/82 (25%), Positives = 32/82 (39%)
Frame = +1
Query: 307 EALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTXLALQPDYSKAYGRLGLA 486
+ +++ AI + Y + + H R V DCT L + P K R GLA
Sbjct: 25 DVFDEFLNAIGNENTITPVYADSSLTHLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLA 84
Query: 487 LTGLERHCEARAVYARAGQLDP 552
L A + + +LDP
Sbjct: 85 YLRLGHPHLANRDWEHSLELDP 106
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 30.3 bits (65), Expect = 0.20
Identities = 24/96 (25%), Positives = 40/96 (41%)
Frame = +1
Query: 265 KNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTXLAL 444
K+ N+L+K + Y L+ R++ + L + E + L
Sbjct: 410 KDSANDLLKMQMY--FLDVAYELSLAKKRSSKVQAGLGIIMYMLKEYERSADCFRQALQD 467
Query: 445 QPDYSKAYGRLGLALTGLERHCEARAVYARAGQLDP 552
+P + +LG ALT E++ EA + Y RA L P
Sbjct: 468 EPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQP 503
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/64 (20%), Positives = 29/64 (45%)
Frame = +1
Query: 295 ERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTXLALQPDYSKAYGR 474
+ Y + + + +A++ +P N + + AA AVS ++LQP Y +
Sbjct: 452 KEYERSADCFRQALQDEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQPQYVRVRSN 511
Query: 475 LGLA 486
+ ++
Sbjct: 512 MAVS 515
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.20
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Frame = +2
Query: 209 SLSVSDWGRPLTRLKPNDSRTKATSS*KLSVTTKRLKST----RAP*RSTQETQSTTAIA 376
S SV + P+T +S T TSS L+ +T ST P S+ S+TAIA
Sbjct: 3398 SSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIA 3457
Query: 377 RLRISGCATPRQR*ATVPQXSPY-SLTIARRTDALGSRSPAS 499
I +TP + + +P S T+ + +GS S S
Sbjct: 3458 SSSILNSSTPITSSSVLNSSTPISSSTVITSSVVIGSSSVLS 3499
Score = 27.5 bits (58), Expect = 1.4
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 8/148 (5%)
Frame = +2
Query: 131 SKSACNALRPLSS*RRKMRLEAWTYCSLSVSDWGRPLTRLKPNDSRTKATSS*KLS---- 298
S S N+ P++S + + S S+ + P+T +S T TSS ++
Sbjct: 3098 SSSIVNSSTPITS--SSVLNSSTAITSSSILNSSTPITSSSILNSSTPITSSTVVNSSTP 3155
Query: 299 VTTKRLKSTRAP*RSTQETQSTTAIARLRISGCATPRQR*ATVPQXSPY-SLTIARRTDA 475
+T+ +T P S+ S+TAI I +TP + + +P S T +
Sbjct: 3156 ITSSTTLNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTPITSSTTLNTSTP 3215
Query: 476 LGSRSPASRDTA---RRALSTPAPVNST 550
+ S S + TA L++ P+ S+
Sbjct: 3216 ITSSSVLNSSTAITSSSVLNSSTPITSS 3243
Score = 27.1 bits (57), Expect = 1.9
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Frame = +2
Query: 209 SLSVSDWGRPLTRLKPNDSRTKATSS*KLS----VTTKRLKSTRAP*RSTQETQSTTAIA 376
S +V + P+T L +S T TSS L+ +T+ + +T P S+ S+T I
Sbjct: 2558 SSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPIT 2617
Query: 377 RLRISGCATPRQR*ATVPQXSPYSLTIARRTD-ALGSRSPASRD---TARRALSTPAPVN 544
+TP + + +P + + A T ++ S S + T+ ++T P+
Sbjct: 2618 SSTALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPIT 2677
Query: 545 ST 550
S+
Sbjct: 2678 SS 2679
Score = 26.6 bits (56), Expect = 2.5
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Frame = +2
Query: 209 SLSVSDWGRPLTRLKPNDSRTKATSS*KLS----VTTKRLKSTRAP*RSTQETQSTTAIA 376
S +V + P+T ++ T TSS L+ +T+ +T P S+ S+TAI
Sbjct: 3290 SSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAIT 3349
Query: 377 RLRISGCATPRQR*ATVPQXSPYSLTIARRTDALGSRSPASRDTARRALSTPAPVNST 550
I +TP + + +P + + + S +P + T AL+T P+ S+
Sbjct: 3350 SSSILNSSTPVTSSSVLNSSTPIT-----SSTVVNSSTPITSST---ALNTSTPITSS 3399
Score = 26.2 bits (55), Expect = 3.2
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Frame = +2
Query: 131 SKSACNALRPLSS*RRKMRLEAWTYCSLSVSDWGRPLTRLKPNDSRTKATSS*KLS---- 298
S +A N P++S + + S SV + P+T ++ T TSS L+
Sbjct: 3038 SSTALNTSTPITS--STVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTA 3095
Query: 299 VTTKRLKSTRAP*RSTQETQSTTAIARLRISGCATPRQR*ATVPQXSPYSLTIARRTDAL 478
+T+ + ++ P S+ S+TAI I +TP + + +P + + +
Sbjct: 3096 ITSSSIVNSSTPITSSSVLNSSTAITSSSILNSSTPITSSSILNSSTPIT-----SSTVV 3150
Query: 479 GSRSPASRDTARRALSTPAPVNST 550
S +P + T L+T P+ S+
Sbjct: 3151 NSSTPITSST---TLNTSTPITSS 3171
Score = 24.6 bits (51), Expect = 9.9
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 8/122 (6%)
Frame = +2
Query: 209 SLSVSDWGRPLTRLKPNDSRTKATSS*KL----SVTTKRLKSTRAP*RSTQETQSTTAIA 376
S +V + P+T +S T TSS + S+T+ + ++ P S+ S+T I
Sbjct: 2390 SSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSVLNSSTPITSSSVLNSSTPIT 2449
Query: 377 RLRISGCATPRQR*ATVPQXSPYSLTIARRTDA-LGSRSPASRD---TARRALSTPAPVN 544
+ +TP + + +P + + A T + S S + T+ ++T P+
Sbjct: 2450 SSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPIT 2509
Query: 545 ST 550
S+
Sbjct: 2510 SS 2511
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/84 (21%), Positives = 39/84 (46%)
Frame = +1
Query: 301 YNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTXLALQPDYSKAYGRLG 480
+++AL+ RAI++DP Y + H + E + + + + + A+ LG
Sbjct: 447 HSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGLG 506
Query: 481 LALTGLERHCEARAVYARAGQLDP 552
+ R+ +A + RA +++P
Sbjct: 507 MVYLKTGRNDQADFHFQRAAEINP 530
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 349 RNAVYYCNRAAAHFRLCDPEAAVSDCTTXLALQPDYSKAYGRLGLALTGLERHCEARAVY 528
R +Y NR + ++ E + S + L P+Y+ AY LGL + A +
Sbjct: 543 RYGIYILNRKSENYL----EDSFSAFVSSLRKDPNYAPAYTSLGLYYRDIHDMVRATKCF 598
Query: 529 ARAGQLD 549
+A +LD
Sbjct: 599 QKAFELD 605
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 232 PPANKAEA-ERLKNEGNELMKAERYNEALEKYTRAI 336
P ++ + A E+L +GN + Y EA++KY +A+
Sbjct: 24 PSSSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQAL 59
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 428 PQXSPYSLTIARRTDALGSRSPASRDTARRALS 526
P+ PYS + +A R P R +AR LS
Sbjct: 304 PRKHPYSTLLCEIVEACLQREPNKRPSARELLS 336
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 235 AAPVA-DGQAAVSPGLEPHLPSSARKRS 155
A P A Q+++SP L LP+S +KRS
Sbjct: 167 AQPAALSSQSSLSPKLSSVLPTSTQKRS 194
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 449 GCRASXVVQSLTAASGSHSLK 387
G AS VQ LTA SH LK
Sbjct: 503 GSVASSAVQRLTAVKNSHKLK 523
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.6 bits (51), Expect = 9.9
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 262 LKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDP 405
L NE K Y + +I DP NAV Y N A + DP
Sbjct: 498 LYNEWERFAKLVAYLDHFGDEILSINFDPSNAVTYINYANKVAFIRDP 545
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 194 AWTYCSLSVSDWGRPLTRLKPNDSRTKATSS*KLSVTTKRLKSTR 328
A++ C ++DW R KP S +SS S T S++
Sbjct: 339 AFSQCLSKIADWLRSCRLTKPESSSVPPSSSISRSSTIHSCTSSK 383
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 9.9
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +1
Query: 28 IEMSNEIKIVAASIVNFLKQQLDGD-SLSPDSRESVEVGVQCIETA--FELTTEDAARGL 198
+E + AAS N + +L +L D+ ++ + T F+ GL
Sbjct: 199 VEAGGNVTWDAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGL 258
Query: 199 DLLQLVRQRLGPPANKA 249
L QL QRLG PA+KA
Sbjct: 259 GL-QLDTQRLGQPAHKA 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,590
Number of Sequences: 5004
Number of extensions: 33547
Number of successful extensions: 164
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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