Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2012
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0449 + 3335408-3335479,3336310-3336389,3336911-3336989,333... 61 9e-10
08_01_0075 - 533839-534642,534653-534706,534890-534961,535377-53... 31 1.1
07_03_0504 - 18842442-18844668,18845418-18845428 31 1.4
11_04_0180 + 14565328-14566226,14566377-14566644 29 4.3
01_06_0841 + 32361510-32362178,32362719-32363469,32363671-323638... 29 4.3
01_03_0281 - 14570635-14574633 28 7.6
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 28 10.0
04_04_1386 - 33166470-33166705,33166811-33167087,33167240-331675... 28 10.0
>01_01_0449 +
3335408-3335479,3336310-3336389,3336911-3336989,
3337342-3337423,3337820-3337976,3338660-3338717,
3338718-3338828,3339211-3339257,3339820-3339948,
3340750-3340834,3341264-3341344,3341881-3341886
Length = 328
Score = 61.3 bits (142), Expect = 9e-10
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +1
Query: 106 RVLDKLEASINSGQYYEAHQMYRTLYFRYLTQKKYPEXXXXXXXXXXXXXERDQQGSGAD 285
+ ++KLE + G YYEA QMY++ RY+ +KY E + Q G +
Sbjct: 24 QTIEKLENMVAEGNYYEAQQMYKSTGARYIAAQKYLEALDILQSGALVQLKHGQVTCGGE 83
Query: 286 LAILFVEVLTKSETKPNEEWVSKLAKLFELISS-SVP 393
LAI+FV+ L K+ NEE ++ K+++ SVP
Sbjct: 84 LAIMFVDTLVKAALPYNEETFDRIRKMYDAFPRISVP 120
>08_01_0075 -
533839-534642,534653-534706,534890-534961,535377-535379
Length = 310
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 439 NNKKGDPLLHKKIAEVFWKEKKYTAAHRHFLHSSDGSAYANMLIELHT 582
N+K GDP + A Y HRH++H++ +Y ++ + HT
Sbjct: 86 NSKDGDPHMETTAALCLENAPSY---HRHYIHTAGSRSYGYLMADGHT 130
>07_03_0504 - 18842442-18844668,18845418-18845428
Length = 745
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +1
Query: 262 DQQGSGADLAILFVEVLTKSETKPNEEWVSKLAKLFELIS 381
DQ +G LA+ + +LT ETK +E+++KLAKL L++
Sbjct: 622 DQLNNG--LALPNLTMLTLKETKVTQEFINKLAKLPSLVT 659
>11_04_0180 + 14565328-14566226,14566377-14566644
Length = 388
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/84 (20%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 334 NEEWVSKLAKLFELISSSVPERETFLTNSIKWSMDNNKKGDPLLHKKIAEVFWKEKKYTA 513
NE+ S + L ++ S P R + ++S +W + + L+ + E+ + ++ A
Sbjct: 287 NEQGSSSSSTLVQISSGVPPSRSEWRSSSSRWGLGEIARRMDTLYMQTGEIQYNLTEHIA 346
Query: 514 AHRHFLHSSDG--SAYANMLIELH 579
+ + S+D + + NM+ + H
Sbjct: 347 QTQEWQQSADAQFANFNNMMQQQH 370
>01_06_0841 +
32361510-32362178,32362719-32363469,32363671-32363865,
32364353-32364612
Length = 624
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = -2
Query: 439 YPLTILLNLLERFLALGHWS*LIQIILPISRPILH*VWFPILLKLLRRVWRDQL-HFLVD 263
+ +T L++L +R L L++ +LPI + H P+L K +RR+ R L + +D
Sbjct: 213 FKITELISLFQRRLLNFVDKTLVEDVLPILQVAFHSELTPVLEKCIRRIARSNLDNVSLD 272
Query: 262 R-VPKEV 245
+ +P EV
Sbjct: 273 KELPPEV 279
>01_03_0281 - 14570635-14574633
Length = 1332
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 532 VKSVYEQLCTFFPSKILLLFSCVGVGHL 449
+KS+ E++C + + L L C+ +GHL
Sbjct: 604 IKSLPEEICILYNLQTLNLSGCISLGHL 631
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 58 NCNKNIMATRGERGVVRVLDKLEASINSGQYYEAHQMYRTLYFRYLTQK 204
NCN N+M + V+RVLD + ++ G Y + R L RYL K
Sbjct: 588 NCNINMMPSLLSFHVLRVLDLDDCNVTGGLYLKHIGKLRQL--RYLGMK 634
>04_04_1386 -
33166470-33166705,33166811-33167087,33167240-33167508,
33167658-33167882,33168020-33168080
Length = 355
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Frame = -1
Query: 482 SAIFLCRSGSPFLLLSIDHFIEFV-------RKVSRSGTLELINSNNFANFETHSSLGLV 324
S +F SG+P L +DHF + V R + S L ++ N++A + +
Sbjct: 127 SGVFKLPSGAPTLDKQVDHFRDLVQDGTITRRNLRNSIALVAVSGNDYARLANVNDTSKM 186
Query: 323 SDFVKTSTKSMAR 285
FV T +A+
Sbjct: 187 IKFVDEVTSEIAK 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,060,617
Number of Sequences: 37544
Number of extensions: 427198
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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