Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2012
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53421| Best HMM Match : Arf (HMM E-Value=0)                         85   5e-17
SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)                    32   0.63 
SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16)                     28   7.7  
SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 28   7.7  
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
          Length = 625

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
 Frame = +1

Query: 61  CNKNIMA--TRGERGVVRVLDKLEASINSGQYYEAHQMYRTLYFRYLTQKKYPEXXXXXX 234
           C++N MA  +RG  G+ RVL KL  SI  G YYEAHQM RTLYFRY +QKKY +      
Sbjct: 264 CSENKMAAVSRGG-GIQRVLQKLNKSIEEGNYYEAHQMIRTLYFRYTSQKKYQDAIELLH 322

Query: 235 XXXXXXXERDQQGSGADLAILFVEVLTKSETKPNEEWVSKLAKLFELISSSV-PERETFL 411
                  +  Q GSG DLA+L ++ L   +   + E + K+  +F+        +R+ F+
Sbjct: 323 NGTLLFFKYKQMGSGTDLAMLMLDCLKAGKDTIDSECLQKIISIFKAFDPEADTDRQEFI 382

Query: 412 TNSI 423
             ++
Sbjct: 383 QKAL 386


>SB_9615| Best HMM Match : GBP (HMM E-Value=2.8e-22)
          Length = 621

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 310 LTKSETKPNEEWVSKLAKLFELISSSVPERETFLTNSIKWSMDNNK 447
           LT + T+ NEE +S+  K FE+ +  +P++E        W + N +
Sbjct: 381 LTDTITRANEEALSQAEKFFEMETDGIPKKEDGNQKECDWLIANKR 426


>SB_33705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 846

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 410 RKVSRSGTLELINSNNFANFETHSSLGLVSDFVKTSTK 297
           R  +R   +  +N NN+  F T    G  +DFV+T  K
Sbjct: 164 RDATREKVISAVNLNNWMVFFTQRDSGKANDFVQTMNK 201


>SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16)
          Length = 408

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
 Frame = +1

Query: 355 LAKLFELISSSVPERETFLTNSIKWSMDNNKKGDPLLHKKIAEVFWKEKKYTAAHRHFLH 534
           ++ L +L   S+P+  T      +WS+   KK +P    +I +V  K+ +  AA+  F+ 
Sbjct: 117 ISLLKQLGHKSIPDELTCTMMKQRWSVPRGKKIEP---SQIQDVLVKKPQMGAAYGKFIK 173

Query: 535 SSDGS-AYANMLIELHTTKGLKSE---IDLFIAQACVANTLFEKCKNGN 669
           S+  S A     +   T  GL  +    ++   +  + N  F  CK GN
Sbjct: 174 STLYSPATMYGFLTKETFNGLDPQPLFANIVPHENQLGNVPFVPCKFGN 222


>SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +2

Query: 671 ETFLRYTETHPKIKNS---KGPPYIFPLLNFLWF 763
           ETF    + HP          PPYIF L+ + WF
Sbjct: 434 ETFFASMQNHPGAPGGVVGDQPPYIFKLIRWYWF 467


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 383 ELINSNNFANFETHSSLGLVSDFVKTSTKSMAR 285
           E IN N   N ++H S  L+++ V+TST+   R
Sbjct: 325 EKINENISLNVDSHESTNLLTEKVETSTQKRER 357


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 391 PERETFLTNSIKWSMDNNKKGDPLLHKKIAEVFWKEKKYTAAHRHFLHSSD 543
           PE E   T +     +N KK   +  K++    +K+K +  AH+HF ++ +
Sbjct: 210 PEPEKMETETEPELAENEKKA--MEEKELGNAAYKKKDFDTAHKHFNNAKE 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,280,038
Number of Sequences: 59808
Number of extensions: 536699
Number of successful extensions: 1171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)