Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2012
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003550-1|AAH03550.2|  327|Homo sapiens chromosome 7 open readi...   175   2e-43
AF132954-1|AAD27729.1|  320|Homo sapiens CGI-20 protein protein.      171   2e-42

>BC003550-1|AAH03550.2|  327|Homo sapiens chromosome 7 open reading
           frame 20 protein.
          Length = 327

 Score =  175 bits (426), Expect = 2e-43
 Identities = 89/203 (43%), Positives = 123/203 (60%), Gaps = 1/203 (0%)
 Frame = +1

Query: 85  RGERGVVRVLDKLEASINSGQYYEAHQMYRTLYFRYLTQKKYPEXXXXXXXXXXXXXERD 264
           R   GV RV  KL AS+  G YYEAHQMYRTL+FRY++Q K+ E                
Sbjct: 18  RNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHTEARELMYSGALLFFSHG 77

Query: 265 QQGSGADLAILFVEVLTKSETKPNEEWVSKLAKLFELISSSVPERETFLTNSIKWSM-DN 441
           QQ S ADL++L +E L K+E +  +E +  LAK+F L+  + PER TF++ ++KWS   +
Sbjct: 78  QQNSAADLSMLVLESLEKAEVEVADELLENLAKVFSLMDPNSPERVTFVSRALKWSSGGS 137

Query: 442 NKKGDPLLHKKIAEVFWKEKKYTAAHRHFLHSSDGSAYANMLIELHTTKGLKSEIDLFIA 621
            K G P LH+ +A   WKE+ Y  +  HFLHS+DG   ANML+E  T++G +SE+D+F+A
Sbjct: 138 GKLGHPRLHQLLALTLWKEQNYCESRYHFLHSADGEGCANMLVEYSTSRGFRSEVDMFVA 197

Query: 622 QACVANTLFEKCKNGN*NIFEVY 690
           QA V   L  K K+    +F  Y
Sbjct: 198 QA-VLQFLCLKNKSSASVVFTTY 219



 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +2

Query: 629 VLQILCLRNVRMATETFLRYTETHPKIKNSKGPPYIFPLLNFLWFLLRAVE 781
           VLQ LCL+N   A+  F  YT+ HP I++  GPP++ PLLNF+WFLL AV+
Sbjct: 200 VLQFLCLKNKSSASVVFTTYTQKHPSIED--GPPFVEPLLNFIWFLLLAVD 248


>AF132954-1|AAD27729.1|  320|Homo sapiens CGI-20 protein protein.
          Length = 320

 Score =  171 bits (417), Expect = 2e-42
 Identities = 87/200 (43%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
 Frame = +1

Query: 94  RGVVRVLDKLEASINSGQYYEAHQMYRTLYFRYLTQKKYPEXXXXXXXXXXXXXERDQQG 273
           R V RV  KL AS+  G YYEAHQMYRTL+FRY++Q K+ E                QQ 
Sbjct: 14  RAVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHTEARELMYSGALLFFSHGQQN 73

Query: 274 SGADLAILFVEVLTKSETKPNEEWVSKLAKLFELISSSVPERETFLTNSIKWSM-DNNKK 450
           S ADL++L +E L K+E +  +E +  LAK+F L+  + PER TF++ ++KWS   + K 
Sbjct: 74  SAADLSMLVLESLEKAEVEVADELLENLAKVFSLMDPNSPERVTFVSRALKWSSGGSGKL 133

Query: 451 GDPLLHKKIAEVFWKEKKYTAAHRHFLHSSDGSAYANMLIELHTTKGLKSEIDLFIAQAC 630
           G P LH+ +A   WKE+ Y  +  HFLHS+DG   A+ML+E  T++G +SE+D+F+AQA 
Sbjct: 134 GHPRLHQLLALTLWKEQNYCESRYHFLHSADGEGCADMLVEYSTSRGFRSEVDMFVAQA- 192

Query: 631 VANTLFEKCKNGN*NIFEVY 690
           V   L  K K+    +F  Y
Sbjct: 193 VLQFLCLKNKSSASVVFTTY 212



 Score = 63.3 bits (147), Expect = 1e-09
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +2

Query: 629 VLQILCLRNVRMATETFLRYTETHPKIKNSKGPPYIFPLLNFLWFLLRAVE 781
           VLQ LCL+N   A+  F  YT+ HP I++  GPP++ PLLNF+WFLL AV+
Sbjct: 193 VLQFLCLKNKSSASVVFTTYTQKHPSIED--GPPFVEPLLNFIWFLLLAVD 241


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,194,317
Number of Sequences: 237096
Number of extensions: 2490630
Number of successful extensions: 4418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4411
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)