Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2012
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.20 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.20 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 424 LLNLLERFLALGHWS*LIQIILPISRPILH*VWFPILLKLLRRVWRDQ 281
           + NL+   L +GHWS  +Q ++P+ +      W  I  +L    W +Q
Sbjct: 279 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSWVAI-NELQDSFWLEQ 325


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 424 LLNLLERFLALGHWS*LIQIILPISRPILH*VWFPILLKLLRRVWRDQ 281
           + NL+   L +GHWS  +Q ++P+ +      W  I  +L    W +Q
Sbjct: 247 IFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSWVAI-NELQDSFWLEQ 293


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 590 PLVVCNSISMLAYAEPSDECKK 525
           P ++ NS+++L +  PS+  +K
Sbjct: 223 PCILINSVALLVFYVPSESGEK 244


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 741 GNIYGGPLLFLILGCVSVYLKNVSVAILTFLKQSICNTGLC 619
           G+I  G ++  IL CV+V+L         +L  S+  + LC
Sbjct: 49  GSIIVGTVIGNILVCVAVFLVRKLRRPCNYLLVSLAVSDLC 89


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 406 FLTNSIKWSMDNNKKGDP 459
           F    +KW  +N  KG P
Sbjct: 318 FQNRRMKWKKENKSKGTP 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,716
Number of Sequences: 438
Number of extensions: 5394
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)