Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2010
(802 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.14
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 28 1.8
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 28 1.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi... 27 3.1
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 27 4.1
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 27 4.1
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 5.4
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 26 5.4
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 26 7.2
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 26 7.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 7.2
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 26 7.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 31.5 bits (68), Expect = 0.14
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 275 KKNNAYETLLSKYKEMFSQASKDDVKKKFNSLRTNHRKELKKHLQSKKYTLVAMLSPCL* 96
+K ++ E L KY+ + + + D+ RTN + KKHL + T++A+ C
Sbjct: 170 RKGSSLEYTLQKYRLVSNYLTTKDIMAAIRYCRTNMAEFQKKHLADIQKTMIALFF-CSR 228
Query: 95 NKTL 84
N+ L
Sbjct: 229 NEVL 232
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = -3
Query: 245 SKYKEMFSQA---SKDDVKKKFNSLRTNHRKELKKHLQSKKYTLV 120
++ K +FSQ +D +K+ N LRT HR E+K L+ +K L+
Sbjct: 402 AEMKTIFSQKVQEKEDRLKQSENELRTRHR-EMKAALEKQKADLI 445
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 801 YYKALKRLHNGPNPTLFQYIKRKTQKI*AMVTDKLFSAIINSRISPI 661
YY L + N PNP++ I +K + + K +S I+N R PI
Sbjct: 61 YYPLLNK--NYPNPSIISNIIQKALSNHLLYSSKNYSFIVNIRALPI 105
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 428 RRHEEYTRACKMAERENPKVKERVFLRMYPIVQRI 324
+ H AC +A R NP +K R++ + IV R+
Sbjct: 160 KSHLMLATACLIALRHNPSLKARIYTDVLNIVDRL 194
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 452 RNIFQSVVRRHEEYTRACKMAERENPKVKERVFLR 348
+ I R +E+T C M RENPK + L+
Sbjct: 1715 KEIIPDTCRFGDEFTHRCLMPSRENPKAVQYELLQ 1749
>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 528 HCTIFNINPKRSIILFRGRLRYIYGLSWRNPSGNRPARQTVLLRLWD*FSSL*LQRK 698
H + F K S LFR L Y L++ + + A + + + +W SSL QRK
Sbjct: 193 HGSSFGQELKSSAFLFRNNLSDRYFLAFGDVEPDMVASEPLNIHIWRACSSLIAQRK 249
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +1
Query: 25 AFENAFFFKLYYFHFIHSSHKVLFQRQGD-NIATKVYFFDWRCFLSSFRWLVLK-ELNFF 198
AF FFF ++F H +F D N+ FF + S F +L NFF
Sbjct: 73 AFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFF 132
Query: 199 F 201
F
Sbjct: 133 F 133
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 718 GNGDRQAFLCNYKLENQSHNRSKTVCRAG 632
G+G Q F C+ + + SHN++ + R G
Sbjct: 288 GHGINQLFHCSPSIPHYSHNKAPGIARPG 316
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 242 KYKEMFSQASKDDVKKKFNSLRTNHRKELKKHLQSKKYTLVAMLSPC 102
K K SQ S DDV KK + + LKK ++ LV + C
Sbjct: 10 KRKSHHSQLSVDDVPKKIPLFKKKISQALKKASTFERQKLVRRIKNC 56
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -1
Query: 352 CECIQLYRELPSLWNVKCKEYHDRDKKKTMLTKHCCLNTKRCFH 221
C+C+ + LP + K H++D + ++ K+ N R H
Sbjct: 279 CKCLDMLTLLPLEQLEQIKAEHEKDPSQRIVHKYLASNVVRMVH 322
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 251 LLSKYKEMFSQASKDDVKKKFNSLRTNHRKE-LKKHLQSKKYTLVAM 114
+LS K+ K + +KK + LRT+ R+E L+K + + ++VA+
Sbjct: 89 VLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSVVAV 135
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 169 WLVLKELNFFFTSSLLACENISLYLDNNVS*A---LFFFYHGHDIL 297
W ++ SSL+ +N+SL LD + A L FY G+D L
Sbjct: 4 WRNFLDIKVINESSLVTVDNLSLQLDISSEKAQEYLNMFYQGNDFL 49
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 612 RNPSGNRPARQTVLLRLWD*FSSL*LQRKACRSPLPISFESSFLYIGIMLDL-DHC 776
R N+ + + W L + CR P+ E +F IGI+ ++ D C
Sbjct: 16 RQEDVNKESNMNDSVTEWSVLEETLLLKAICRGLRPVGIEKNFYMIGILREIRDGC 71
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 625 ETGLLDRLSCFDYGTDSRVYNCREKLVGHHCLYLLSLPFYILE*CWIWTI 774
ET LL ++ F VY +G H ++L+LP + C +T+
Sbjct: 49 ETRLLYKIQSFFRNPWLDVYFMYTATLGTHVFFMLALPIFFWSGCIYYTL 98
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 354 SANVSNCTENCRLCGMSNAKNI--MTVIKKKQCLRNIVV 244
S +S+C +C LC +N + +TV+ K+ + ++ +
Sbjct: 377 SKQLSHCALDCELCYTTNGMELARLTVVAKESIIMDVFI 415
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 203 VKKKFNSLRTNHRKELKKHLQSKKYTLVAMLSPC 102
+K+ FNSL + + ++K L+S Y+L+ + C
Sbjct: 631 LKRIFNSLTSINDSNIEKLLESISYSLLKLFFKC 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,295
Number of Sequences: 5004
Number of extensions: 75375
Number of successful extensions: 208
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -