Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2010
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0989 + 22069244-22071679                                         29   3.3  
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738...    29   5.7  
06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21...    28   7.5  
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349...    28   9.9  
03_02_0003 - 4862220-4863428                                           28   9.9  

>10_08_0989 + 22069244-22071679
          Length = 811

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -3

Query: 236 KEMFSQASKDDVKKKFNSLRT 174
           +++FSQ S++D+KK F S++T
Sbjct: 785 RDVFSQVSEEDIKKNFMSMKT 805


>10_06_0083 +
           10471648-10471806,10473261-10473343,10473384-10473810,
           10475806-10475932,10476329-10476471,10476687-10476749,
           10476833-10476898,10477047-10477085
          Length = 368

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 616 TLPETGLLDRLSCFDYGTDSRVYNCREKLVGHHCL 720
           +L + G  DR     YG D R+    E+++G  CL
Sbjct: 72  SLEQEGFQDRFGFLRYGEDGRIEGELERILGPQCL 106


>06_01_0021 -
           214401-214613,214707-214790,214887-215041,215165-215234,
           215334-215509,215631-215803,216715-216938
          Length = 364

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 581 PPKVYLWSIVEKPFRKPACSTDCLASIMGLI 673
           PP+   W + E  FR P    +C++  MGLI
Sbjct: 234 PPR---WLVAENTFRPPYYHRNCMSEFMGLI 261


>07_03_1304 - 25629822-25629839,25630091-25631148,25631784-25634928,
            25635454-25636293
          Length = 1686

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 652  CFDYGTDSRVYNCREKLVGHHCLYLLSLPFYILE 753
            CF  G   R  NC       +C+++  +P ++ E
Sbjct: 1155 CFALGVGGRYINCEVSTRHENCIFVRGIPMHVTE 1188


>03_02_0003 - 4862220-4863428
          Length = 402

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 317 SVECQMQRIS*P**KKNNAYETLLSKYKEMFSQASKDDVK 198
           SV C++++I  P     N  + ++SKY EM + + +D VK
Sbjct: 194 SVPCELEKIEFPDLNVVNENQIMVSKYFEMETLSYEDSVK 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,375,451
Number of Sequences: 37544
Number of extensions: 431307
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)