Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2009
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 178 9e-46
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 154 1e-38
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 145 7e-36
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 50 9e-13
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 55 1e-08
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 40 3e-04
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 37 0.003
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 34 0.020
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 31 0.25
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 29 0.58
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.77
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 1.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.3
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 28 1.8
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 27 2.3
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.3
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 27 3.1
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 4.1
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 7.2
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 26 7.2
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 7.2
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 26 7.2
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 25 9.5
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 9.5
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 178 bits (433), Expect = 9e-46
Identities = 91/185 (49%), Positives = 125/185 (67%), Gaps = 1/185 (0%)
Frame = +3
Query: 249 RSCTGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAA 428
RS +G L P SRDIKI +++++F+G L+++ +ELN G+RYGL+G NG GKS+ L +
Sbjct: 61 RSASGVLTSQPMSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLES 120
Query: 429 LGRREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERV-KLEKLAEMLAHCEDDESQE 605
+ R+V PEHID + L E SD A+ +++ +++V KLE E L+ DD
Sbjct: 121 VAARDVEYPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLEAEIEELSTA-DDVDDV 179
Query: 606 QLMDVYDRLDDLSADTAEARAANILHGLGFTKEMQQKATKDFSGGWRMRIALARALYVKP 785
L Y+ LDD+ T EA+AA ILHGLGFT+EM K TKD SGGWRMR+AL+RAL++KP
Sbjct: 180 LLESKYEELDDMDPSTFEAKAAMILHGLGFTQEMMAKPTKDMSGGWRMRVALSRALFIKP 239
Query: 786 HLLLL 800
LLLL
Sbjct: 240 SLLLL 244
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 336 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHI 464
L +D ++ R +VG NG GKS+LL + +PI ++
Sbjct: 405 LYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGNV 447
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 154 bits (374), Expect = 1e-38
Identities = 91/200 (45%), Positives = 120/200 (60%), Gaps = 27/200 (13%)
Frame = +3
Query: 282 RSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEH 461
+S+DIKI + F G +L L L GRRYGL G NG GKS+LL AL RRE+ IP H
Sbjct: 179 KSKDIKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTH 238
Query: 462 IDIFHLTREMPASDKTALQCVMEVD---------EERVK-----LEKLAEMLA------- 578
I I H+ +EM D ALQ V++ D +E++ +EK E L+
Sbjct: 239 ITILHVEQEMTGDDTPALQSVLDADVWRKYLIQDQEKITNRLSTIEKELEELSKDQTADQ 298
Query: 579 ------HCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLGFTKEMQQKATKDFSGG 740
E DE +L+D+ ++L ++ +D AE+RAA IL GLGFT+EMQ ATK FSGG
Sbjct: 299 AISRRLERERDELDLRLLDIQNKLSEMDSDRAESRAATILAGLGFTQEMQSHATKTFSGG 358
Query: 741 WRMRIALARALYVKPHLLLL 800
WRMR++LARAL+ +P LLLL
Sbjct: 359 WRMRLSLARALFCQPDLLLL 378
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 327 GSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAAL 431
G +L+ +++ R G+VG NG GKS++L L
Sbjct: 530 GHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLL 564
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 145 bits (351), Expect = 7e-36
Identities = 76/182 (41%), Positives = 114/182 (62%), Gaps = 1/182 (0%)
Frame = +3
Query: 258 TGSLAVHPRSRDIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 437
TG+L P SRD+++ S++ +G L++D+ L L GRRYGL+ NG GKS+LL A+
Sbjct: 264 TGNLLSPPNSRDLQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIAC 323
Query: 438 REVPIPEHIDIFHLTREMPASDKTALQCVMEVDE-ERVKLEKLAEMLAHCEDDESQEQLM 614
+P P +D + L RE ++ T ++ V++++E ER LE + E L + D++ +L
Sbjct: 324 GLIPTPSSLDFYLLDREYIPNELTCVEAVLDINEQERKHLEAMMEDLLD-DPDKNAVELD 382
Query: 615 DVYDRLDDLSADTAEARAANILHGLGFTKEMQQKATKDFSGGWRMRIALARALYVKPHLL 794
+ RL DL + ++ R IL GL FT EM K T + SGGWRMRIALAR L++KP L+
Sbjct: 383 TIQTRLTDLETENSDHRVYKILRGLQFTDEMIAKRTNELSGGWRMRIALARILFIKPTLM 442
Query: 795 LL 800
+L
Sbjct: 443 ML 444
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 294 IKIANFSITFYGSELLQDTL-LELNCGRRYGLVGLNGCGKSSLLAALGRREVP 449
IK + S + G + L L+ R LVG NG GK++L+ + + P
Sbjct: 594 IKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQP 646
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 49.6 bits (113), Expect(2) = 9e-13
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +3
Query: 291 DIKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP-IPEHID 467
D+ FS+ + LL T L L GRRYGL G NG GKS+L+ A+ +V P H+
Sbjct: 434 DLCNCEFSLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLR 493
Query: 468 IFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDV 620
++ ++ S+ + + V ++ E++ +++ ++L+++
Sbjct: 494 TVYVEHDIDESEADTPSVDFILQDPAVPIKDRDEIVKALKENSFTDELINM 544
Score = 39.1 bits (87), Expect(2) = 9e-13
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 693 FTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLL 800
FT E+ SGGW+M++AL RA++ P +LLL
Sbjct: 537 FTDELINMPIGSLSGGWKMKLALTRAMFKNPDILLL 572
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 294 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 449
IK+ + S + G+ L D +++ R ++G NG GKS+L+ L +P
Sbjct: 673 IKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLP 726
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 687 LGFTKEM-QQKATKDFSGGWRMRIALARALYVKPHLLLL 800
LG E+ K SGG ++++ LA +++PH+++L
Sbjct: 889 LGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVL 927
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 639 LSADTAEARAANILHGLGFTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLL 800
L+ + AA+ LH +GFT EMQ+ SGGW+M++ LARA+ K +LLL
Sbjct: 533 LTMNVTRQEAADALHSVGFTAEMQENPVASLSGGWKMKLELARAMLQKADILLL 586
Score = 52.8 bits (121), Expect = 5e-08
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 306 NFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREV---PIPEHIDIFH 476
+FS+ + G LL T L L G RYG+VG NGCGKS+LL A+G +V P P+ +
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCF 508
Query: 477 LTREMPASD 503
+ + D
Sbjct: 509 VAHSLQGED 517
Score = 29.1 bits (62), Expect = 0.77
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 294 IKIANFSITFYGSEL--LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVP 449
+K+ N S T+ ++ L + + L+ R ++G NG GKS+L+ L +P
Sbjct: 692 LKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIP 745
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 40.3 bits (90), Expect = 3e-04
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 2/156 (1%)
Frame = +3
Query: 339 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPE-HIDIFHLTREMPASDKTAL 515
L + L + + +VG++G GKS+L+ L R+ P + +ID + LT L
Sbjct: 1118 LNNVSLSIEAREKVAIVGISGSGKSTLVELL-RKTYPSEDIYIDGYPLTN---IDTNWLL 1173
Query: 516 QCVMEVDEERVKL-EKLAEMLAHCEDDESQEQLMDVYDRLDDLSADTAEARAANILHGLG 692
+ V VD++ L + E L + D D+ +D L N+ +GL
Sbjct: 1174 KKVAIVDQKPHLLGSTILESLLYGVD-------RDINSVMDALDKTYMTEVIQNLPNGLD 1226
Query: 693 FTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLL 800
T ++ +K+FSGG R+A ARAL P LL+L
Sbjct: 1227 -TPLLE--FSKNFSGGQIQRLAFARALLRNPRLLIL 1259
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 732 SGGWRMRIALARALYVKPHLLLL 800
SGG + RIALARAL +L+L
Sbjct: 572 SGGQQQRIALARALLRDTEILIL 594
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 291 DIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHI 464
++ ++N S TF + L L+L G R LVG NG GKS+LL L + + HI
Sbjct: 2 EVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHI 61
Query: 465 DI 470
+
Sbjct: 62 SV 63
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 294 IKIANFSITFYGSELLQDTLLELNCGRRYGLVGLNGCGKSSLLA 425
I + + + ++G ++L D + G R+ L G NG GK++LLA
Sbjct: 265 ISMEHLNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLA 308
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 30.7 bits (66), Expect = 0.25
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 690 GFTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLL 800
G+ QK + SGG + RIA+ARAL P +LLL
Sbjct: 1247 GYNTLCGQKGSS-LSGGQKQRIAIARALIRNPKILLL 1282
Score = 29.5 bits (63), Expect = 0.58
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Frame = +3
Query: 369 GRRYGLVGLNGCGKSSLLAALGRREVPIPEHI--DIFHLTREMPASDKTALQCVMEVDEE 542
G+ LVG +G GKS+++ + R PI + D L AS + + V + E
Sbjct: 448 GKITALVGASGSGKSTIIGLVERFYDPIGGQVFLDGKDLRTLNVASLRNQISLVQQ--EP 505
Query: 543 RVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSADTAE-ARAANILHGLG--FTKEMQQ 713
+ + E + + D + L + L+ D A+ A A + + L F+ + Q
Sbjct: 506 VLFATTVFENITYGLPDTIKGTLSK--EELERRVYDAAKLANAYDFIMTLPEQFSTNVGQ 563
Query: 714 KATKDFSGGWRMRIALARALYVKPHLLLL 800
+ SGG + RIA+ARA+ P +LLL
Sbjct: 564 RGFL-MSGGQKQRIAIARAVISDPKILLL 591
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 29.5 bits (63), Expect = 0.58
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 660 ARAANILHGLGFTKEMQ-QKATK--DFSGGWRMRIALARALYVKPHLLLL 800
A+ AN L F ++ Q T+ SGG + RIA+ARAL P L+L
Sbjct: 594 AKRANCSFVLSFPEKWSTQVGTRGLQLSGGQKQRIAIARALLRNPAFLIL 643
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 690 GFTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLL 800
G+ + ++ K SGG + R+A+ARA+ P ++LL
Sbjct: 709 GYNSRVGERGLK-LSGGEKQRVAVARAILKDPSIILL 744
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 690 GFTKEMQQKATKDFSGGWRMRIALARALYVKPHLLLL 800
G E+ QK SGG + RI+LARA+Y + + LL
Sbjct: 692 GDQTEVGQKGAS-LSGGQKSRISLARAIYSQADIYLL 727
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 339 LQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEHIDI 470
L + +E++ + G+VG G GKS+L AL R P I+I
Sbjct: 1243 LNNINIEISPREKIGIVGRTGAGKSTLAMALFRIIEPTEGKIEI 1286
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +3
Query: 279 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 452
P IK ++S+ + + +L D + + + G+VG G GKS+L AL R P
Sbjct: 1219 PSHGAIKFDHYSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLIEPT 1278
Query: 453 PEHIDI 470
I +
Sbjct: 1279 SGDIQL 1284
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 732 SGGWRMRIALARALYVKPHLLLL 800
SGG + RI+LARA+Y + + LL
Sbjct: 707 SGGQKARISLARAVYSRSDIYLL 729
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = +3
Query: 291 DIKIANFSITFYGSELLQDTLLELNCGRRYG----LVGLNGCGKSSLL-AALGRRE 443
+IK FS + G + TL +++ R G +VG G GKSSLL A LG +
Sbjct: 579 EIKKGTFSWSGPGQNAAEPTLRDIDFVARRGELCCIVGKVGMGKSSLLEACLGNMQ 634
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 336 LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGR 437
+L + G + VG +GCGKS++L L R
Sbjct: 458 ILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFR 491
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 732 SGGWRMRIALARALYVKPHLLLL 800
SGG + RIALARA+Y ++L+
Sbjct: 741 SGGQKQRIALARAVYSPTSIVLM 763
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 531 VDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRL-DDLSADTAEA 662
+DE + E+ L DDE +E++ D+ D L D S +T+E+
Sbjct: 197 IDEGEEEEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMETSES 241
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 369 GRRYGLVGLNGCGKSSLLAALGRREVP 449
G+ GLVG NG GKS+ L L + P
Sbjct: 103 GQVLGLVGTNGIGKSTALKILSGKMKP 129
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 480 TREMPASDKTALQCVMEVDEERVKLEK-LAEMLAHCEDDESQEQLMDVYDRLDDLSADTA 656
TRE ASD L+ +M EE V + L +H + + +E++ + + L+A+ A
Sbjct: 1000 TRERNASDNLRLRALMRQLEEAVTQKNYLLSQQSHDDRESFRERMQILKSKYGALNAERA 1059
Query: 657 EARAANILHGLGFTKEMQQKATKD 728
LG K+++ TKD
Sbjct: 1060 GL--------LGECKQLENSITKD 1075
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 4.1
Identities = 37/179 (20%), Positives = 78/179 (43%), Gaps = 5/179 (2%)
Frame = +3
Query: 279 PRSRDIKIANFSITFYGSE--LLQDTLLELNCGRRYGLVGLNGCGKSSLLAALGRREVPI 452
P + I N ++++ + +L+D LE+ + +VG G GKS++ L R + +
Sbjct: 1175 PTLGHVSIKNLTVSYSIGQAAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIM 1234
Query: 453 PEHIDIFHLTREMPASDKTAL-QCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDVYDR 629
+++ + ++ + D L Q + + ++ V + ++ +L ++
Sbjct: 1235 SGAVEVDGI--DINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDGELNEI--- 1289
Query: 630 LDDLSADT-AEARAANILHGLGFTKEMQ-QKATKDFSGGWRMRIALARALYVKPHLLLL 800
L S ++ +A N L + +FS G R +ALARAL K +++L
Sbjct: 1290 LKTASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKSRIVIL 1348
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 732 SGGWRMRIALARALY 776
SGG + R++LARALY
Sbjct: 708 SGGQKQRVSLARALY 722
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 407 STPIKSD*PISSPTIQLQESILK*LTPIESN*KVS 303
S+P++ P+ PT+QLQ S L L P E KV+
Sbjct: 437 SSPVR---PMLKPTLQLQNSPLSKLVPQEVGNKVN 468
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 354 LELNCGRRYGLVGLNGCGKSSLLAALGRREVPIPEH 461
LEL GLVGL GKS+LL L + + E+
Sbjct: 231 LELKTICEIGLVGLPNAGKSTLLNCLTASKSKVGEY 266
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/57 (21%), Positives = 26/57 (45%)
Frame = +3
Query: 435 RREVPIPEHIDIFHLTREMPASDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQE 605
+ ++P +F+L +PAS T ++ + +K+ E +A +D +E
Sbjct: 298 QHKIPAINEDGLFYLITHLPASGGTGAAAQAAQQKKEQEEKKILETVARMDDSNKKE 354
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 489 MPA-SDKTALQCVMEVDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSA 647
+PA S+K A + L L+ +A + +EQL+D+ D+LD L +
Sbjct: 178 IPAPSEKAADAATHREQSLKQALPSLSNGIAKDSTEIDEEQLLDIRDKLDALKS 231
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 755 YTHTPTSGEVFRCLLLHFLGE 693
+TH P+ E CLLL ++ E
Sbjct: 86 HTHNPSKDETHLCLLLEYMPE 106
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 531 VDEERVKLEKLAEMLAHCEDDESQEQLMDVYDRLDDLSADTAEARAANI-LHGLGFTKEM 707
VD++ + E+ L S + ++DV + SAD E R A++ T E
Sbjct: 17 VDQDLSEDEEDERFLKAIRSSRSTKPVVDVLKVKSESSADELEERDAHLDRFRRDSTFES 76
Query: 708 QQKATKDFSGG 740
+ +DFSGG
Sbjct: 77 ETSDHEDFSGG 87
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 487 SRVRWNMSMCSGIGTSRRPKAASNDDFP 404
SR + +M G+GT ++P+ A +D FP
Sbjct: 200 SRSAVSGNMNPGVGTLQQPQRAGSDTFP 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,600
Number of Sequences: 5004
Number of extensions: 59671
Number of successful extensions: 327
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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