Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2008
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    35   0.014
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    29   0.72 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   1.3  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    28   1.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    28   1.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.1  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   8.9  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
 Frame = +3

Query: 3    NFQINIEDIE--KKNFEEFEKSLRYINDHVFKLLEETFKTQRLDYNCGT----GRSHDEE 164
            N  + + D+E  KK +E  +  L  + D      E + K + L +N  +      S+ E+
Sbjct: 1159 NLLLKVSDLENYKKKYEGLQLDLEGLKDVDTNFQELSKKHRDLTFNHESLLRQSASYKEK 1218

Query: 165  LKLLIDKNKQLRQEVDNKTNEILILQTKYENYKKGLYKYKQVSHRYSPL 311
            L L   +NK L  +V + T ++  L  K     +   K   + H YS L
Sbjct: 1219 LSLASSENKDLSNKVSSLTKQVNELSPKASKVPELERKITNLMHEYSQL 1267


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 171 LLIDKNKQLRQEVDNKTNEILILQTKYENYKKGLYKYKQVS 293
           +L+D+  + + E   K  E+L   T+ ENY K   K K+ S
Sbjct: 316 MLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSS 356


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +3

Query: 21  EDIEKKNFEEF------EKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLID 182
           E  EK + E+F      EK  +  N HVFKL +E +  + LD+       +   + L+ D
Sbjct: 444 EHFEKNSMEQFCINYANEKLQQEFNKHVFKLEQEEYVKEGLDWRLIEYSDNQGCISLIED 503

Query: 183 K 185
           K
Sbjct: 504 K 504


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +3

Query: 117 QRLDYNCGTGRSHDEELKLLIDKNKQLRQEVDNKTNEILILQTKYENYKKGLYKYKQVSH 296
           +R++      RS DE++K L  +N +L +E+D+         T+ + ++K   +  + S 
Sbjct: 175 ERIELQAAELRSKDEQVKELNARNAKLLEELDSSEEACKSCYTQAKTWEKKFREALRDSK 234

Query: 297 RYS 305
            Y+
Sbjct: 235 EYA 237


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
 Frame = +3

Query: 3    NFQINI----EDIEKKNFEEFEKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELK 170
            N+Q N+     ++E++  +E +K L   N+H  K  E             T    DE   
Sbjct: 988  NYQNNLVQDKNELEER-LKEIQKELEVYNNHFMKQAELM-----------TSNVTDESQL 1035

Query: 171  LLIDKNKQLRQEVDNKTNEI----LILQTKYENYKKGLYKYKQVSHRYSPL 311
            +L    K LR+ + +KTN I     IL+   + YK  L  Y Q+  RY  L
Sbjct: 1036 ML----KTLREALQSKTNNIDHLSTILERNRKEYKSLLDDYNQLRARYKNL 1082


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 295 TDIVHYSAISTGLKYESAIIQYTSCLKISTPLKSPNTQIGTVS 423
           T I+  S +ST  +  S  +Q T+   IST +K P   + + S
Sbjct: 425 TSIIVSSYVSTVTQPASTRVQTTTVSSISTSVKQPTASVASSS 467


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 3   NFQINIEDIEKKNFEEFEKSLRYINDHVFKLL-EETFKTQRLDYNCGTGRSHDEELKLLI 179
           N  +   + +  +  E E  L+ +++   +L  +++  TQ +D      +S+D+E  +L 
Sbjct: 353 NQPLGANEKDAAHITELETKLKELHEQNRRLQRQKSLATQEIDLLRENLKSYDDEEAILS 412

Query: 180 DKNKQLRQ 203
           +KN  +++
Sbjct: 413 EKNTDMKK 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,906
Number of Sequences: 5004
Number of extensions: 60908
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)