Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2008
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 35 0.081
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 34 0.11
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 34 0.14
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 32 0.43
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 31 1.3
07_03_1794 - 29580767-29584189 29 3.0
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 4.0
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 7.0
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 28 9.3
>03_06_0766 -
36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 34.7 bits (76), Expect = 0.081
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Frame = +3
Query: 21 EDIEKKNFEEF------EKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLID 182
E + +FE+F EK ++ N HVFK+ +E + + +D++ + E L L+
Sbjct: 416 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIQFVDNQEILDLIEK 475
Query: 183 KNKQLRQEVDNKTNEILILQTKYENYKKGLY-KYKQVSHRYSPLF------CHQYRFEV* 341
K + +D ++ + +E + + LY K+K H P F H Y V
Sbjct: 476 KPGGIIALLD---ETCMLRNSTHETFAEKLYQKFKDNPHFSKPKFSRSDFTIHHYAGNVA 532
Query: 342 ISHYTIHFMFKNIHTLEIT*H 404
+S Y + I L I H
Sbjct: 533 VSGYLESWCLYGITRLCIVMH 553
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 34.3 bits (75), Expect = 0.11
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Frame = +3
Query: 21 EDIEKKNFEEF------EKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLID 182
E + +FE+F EK ++ N HVFK+ +E + + +D++ + E L L+
Sbjct: 452 ESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIQFVDNQEILDLIEK 511
Query: 183 KNKQLRQEVDNKTNEILILQTKYENYKKGLY-KYKQVSHRYSPLFCHQYRFEV*ISHYTI 359
K + +D ++ + +E + + LY ++K H P F R + I HY
Sbjct: 512 KPGGIIALLD---ETCMLRNSTHETFAEKLYQQFKGNQHFSRPKFS---RSDFTIHHYAG 565
Query: 360 HFMFK 374
H ++
Sbjct: 566 HVTYQ 570
>02_05_0939 +
32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Frame = +3
Query: 21 EDIEKKNFEEF------EKSLRYINDHVFKLLEETFKTQRLDYN 134
E + +FE+F EK ++ N+HVFK+ +E +K++++D++
Sbjct: 421 ESFKNNSFEQFCINFANEKLQQHFNEHVFKMEQEEYKSEKIDWS 464
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/83 (22%), Positives = 42/83 (50%)
Frame = +3
Query: 54 EKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLIDKNKQLRQEVDNKTNEIL 233
EK ++ N HVFK+ +E +KT+ ++++ + + L L+ K + +D E
Sbjct: 454 EKLQQHFNKHVFKMEQEEYKTEEINWSYIEFVDNQDILDLIEKKPIGIVSLLD----EAW 509
Query: 234 ILQTKYENYKKGLYKYKQVSHRY 302
+ + ++ K YK+ ++ R+
Sbjct: 510 LFALQQDDPSKSSYKFSSIASRF 532
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Frame = +3
Query: 3 NFQINIEDIEKKNFEEFEKSLRYIND-HVFKLLEETFKTQR-----LDYNCGTGRSHDEE 164
NF+ N + K EE +LRY + K L+E F Q+ L S ++
Sbjct: 104 NFRNNDDSSLSKLVEE-ALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDV 162
Query: 165 LKLLIDKNKQLRQEVDNKTNEILILQTKYENYKKGLYKYKQVSHR 299
+ L + N L++ VDN + I+ K+E Y + +K R
Sbjct: 163 IVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSR 207
>07_03_1794 - 29580767-29584189
Length = 1140
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = +3
Query: 198 RQEVDNKTNEILILQTKYE----NYKKGLYKYKQVSHRYSPL---FCH 320
+QE+D IL+LQT+ E +Y+ G+ KY+++ + + + CH
Sbjct: 120 QQEIDTLQKAILVLQTEKEFVKSSYETGITKYREIEKQIADMQDQVCH 167
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Frame = +3
Query: 21 EDIEKKNFEEF------EKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLID 182
E + +FE+F EK ++ N HVFK+ +E + +++D++ + + L L+
Sbjct: 980 ESFKLNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEK 1039
Query: 183 KNKQLRQEVDNKTNEILILQTKYENYKKGLYKYKQVSHRY 302
K + +D + ++ +E + + LY+ Q R+
Sbjct: 1040 KPGGVIALLD---EACMFPKSTHETFSQKLYQTFQKHKRF 1076
>03_05_1124 +
30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/84 (20%), Positives = 41/84 (48%)
Frame = +3
Query: 54 EKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLIDKNKQLRQEVDNKTNEIL 233
EK ++ N HVFK+ +E + + +D++ + + L L+ K + +D +
Sbjct: 742 EKLQQHFNQHVFKMEQEDYTREEIDWSYVEFVDNQDVLDLIEKKPGGIIALLD---EACM 798
Query: 234 ILQTKYENYKKGLYKYKQVSHRYS 305
++ +E + + +Y+ + R+S
Sbjct: 799 FPKSTHETFAQKMYQTYKAHKRFS 822
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Frame = +3
Query: 177 IDKNKQLRQEVDNKTNEILILQTKYE----NYKKGLYKYKQVSHRYSPL---FCH-QYRF 332
IDK+ R+E+ EIL++QT+ E +Y+ G+ KY + + + + CH Q +F
Sbjct: 259 IDKDNA-REEISRLQKEILVMQTEKEFIKSSYESGIAKYWDLEKQINDMQEQVCHFQDKF 317
Query: 333 E 335
+
Sbjct: 318 D 318
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,170
Number of Sequences: 37544
Number of extensions: 300023
Number of successful extensions: 586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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