Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2008
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    33   0.29 
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    32   0.38 
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    32   0.38 
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    32   0.38 
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    32   0.38 
AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical ...    32   0.51 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    31   1.2  
AL032663-2|CAA21759.1|   94|Caenorhabditis elegans Hypothetical ...    29   3.6  
U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t prot...    29   4.7  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    29   4.7  
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    29   4.7  
U41027-4|AAC48196.2|  455|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U41027-3|AAQ82846.1|  516|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL117195-13|CAB55023.2|  455|Caenorhabditis elegans Hypothetical...    28   8.3  

>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +3

Query: 30  EKKNFEEFEKSLRYINDHVFKLLEETF-KTQRLDYNCGTGRSHDEEL-KLLIDKNKQLRQ 203
           E KN        R IN+ + K  EE     Q L+    TG+   E L + ++   +QL+Q
Sbjct: 192 ELKNVVNEYTETRQINEELDKQKEEAILHIQALEKEMLTGKKTIEHLNEEVLTSPEQLKQ 251

Query: 204 EVDNKTNEILILQTKYENYKKGL 272
           E++ +   I  L+   E+ KKGL
Sbjct: 252 EMEERKRHIEELRDCLESSKKGL 274


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
            protein F10G8.8b protein.
          Length = 984

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 111  KTQRLDYNCGTGRSHDEELKLLIDKNKQLRQEVDNKTNEILILQTKYENYKK 266
            +  +LD       S  E    L  +N +LR E+D K+ EI  LQ K  NY+K
Sbjct: 858  ENSQLDEQLSNLISEKEASVELSIENDKLRSEIDRKSKEIGDLQRKMNNYEK 909



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 30  EKKNFEEFEKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLIDKNK 191
           ++K F+E    ++   +H  +L+EE   T RL       R+H+EELK + +KNK
Sbjct: 775 QRKTFDEELDCVK--KEHEERLMEEKHAT-RLALEA-VRRAHEEELKNVAEKNK 824


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
            protein F10G8.8a protein.
          Length = 949

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 111  KTQRLDYNCGTGRSHDEELKLLIDKNKQLRQEVDNKTNEILILQTKYENYKK 266
            +  +LD       S  E    L  +N +LR E+D K+ EI  LQ K  NY+K
Sbjct: 858  ENSQLDEQLSNLISEKEASVELSIENDKLRSEIDRKSKEIGDLQRKMNNYEK 909



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 30  EKKNFEEFEKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLIDKNK 191
           ++K F+E    ++   +H  +L+EE   T RL       R+H+EELK + +KNK
Sbjct: 775 QRKTFDEELDCVK--KEHEERLMEEKHAT-RLALEA-VRRAHEEELKNVAEKNK 824


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
            protein F10G8.8b protein.
          Length = 984

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 111  KTQRLDYNCGTGRSHDEELKLLIDKNKQLRQEVDNKTNEILILQTKYENYKK 266
            +  +LD       S  E    L  +N +LR E+D K+ EI  LQ K  NY+K
Sbjct: 858  ENSQLDEQLSNLISEKEASVELSIENDKLRSEIDRKSKEIGDLQRKMNNYEK 909



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 30  EKKNFEEFEKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLIDKNK 191
           ++K F+E    ++   +H  +L+EE   T RL       R+H+EELK + +KNK
Sbjct: 775 QRKTFDEELDCVK--KEHEERLMEEKHAT-RLALEA-VRRAHEEELKNVAEKNK 824


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
            protein F10G8.8a protein.
          Length = 949

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 111  KTQRLDYNCGTGRSHDEELKLLIDKNKQLRQEVDNKTNEILILQTKYENYKK 266
            +  +LD       S  E    L  +N +LR E+D K+ EI  LQ K  NY+K
Sbjct: 858  ENSQLDEQLSNLISEKEASVELSIENDKLRSEIDRKSKEIGDLQRKMNNYEK 909



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 30  EKKNFEEFEKSLRYINDHVFKLLEETFKTQRLDYNCGTGRSHDEELKLLIDKNK 191
           ++K F+E    ++   +H  +L+EE   T RL       R+H+EELK + +KNK
Sbjct: 775 QRKTFDEELDCVK--KEHEERLMEEKHAT-RLALEA-VRRAHEEELKNVAEKNK 824


>AF067222-3|AAC17019.1|  292|Caenorhabditis elegans Hypothetical
           protein H11E01.1 protein.
          Length = 292

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 222 NEILILQTKYENYKKGLYKYKQVSHRYSPLFCHQYRFEV*ISHYTIHFMFKNIHTLEIT 398
           NE + L  K +      ++YK V   +SPL+     F   I H+ + F   N+H L I+
Sbjct: 63  NETINLDVKLDVQNDPAHRYKTVRVEWSPLYAGLRTF---IEHFPVVFHRDNVHRLSIS 118


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 156 DEELKLLIDKNKQLRQEVDNKTNEIL 233
           D+E+KL++++N+QLR ++  K  EI+
Sbjct: 234 DKEIKLIVNENRQLRSQLKQKDIEII 259


>AL032663-2|CAA21759.1|   94|Caenorhabditis elegans Hypothetical
           protein Y75B12B.3 protein.
          Length = 94

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 156 DEELKLLIDKNKQLRQEVDNKTNEILILQTKYENYKK 266
           DE+    ++K K+ R ++DN   +I+ LQ K EN  K
Sbjct: 45  DEQKSENLEKLKESRGDLDNLQKKIVELQAKIENLSK 81


>U29082-4|AAT92084.1|  279|Caenorhabditis elegans Troponin t protein
           3, isoform c protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 147 RSHDEELKLLIDKNKQLRQEVDNKTNEILILQT 245
           R  +EE K  +D++++ R+E  NK N++   QT
Sbjct: 123 RQEEEERKAKVDQDRRNREEEKNKKNQLSGFQT 155


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 147  RSHDEELKLLIDKNKQLRQEVDNKTNEILILQT 245
            R  +EE K  +D++++ R+E  NK N++   QT
Sbjct: 957  RQEEEERKAKVDQDRRNREEEKNKKNQLSGFQT 989


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 147 RSHDEELKLLIDKNKQLRQEVDNKTNEILILQT 245
           R  +EE K  +D++++ R+E  NK N++   QT
Sbjct: 123 RQEEEERKAKVDQDRRNREEEKNKKNQLSGFQT 155


>U41027-4|AAC48196.2|  455|Caenorhabditis elegans Hypothetical
           protein R08E3.3a protein.
          Length = 455

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 177 IDKNKQLRQEVDNKTNEILILQTKYENYKKGLYKYKQVSHRYS 305
           +DK ++  +E   + NE L+LQ +YE   + L +YK +  + S
Sbjct: 211 VDKEEETVEEATEENNENLVLQAEYE---QKLAEYKALQEKRS 250


>U41027-3|AAQ82846.1|  516|Caenorhabditis elegans Hypothetical
           protein R08E3.3b protein.
          Length = 516

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 177 IDKNKQLRQEVDNKTNEILILQTKYENYKKGLYKYKQVSHRYS 305
           +DK ++  +E   + NE L+LQ +YE   + L +YK +  + S
Sbjct: 211 VDKEEETVEEATEENNENLVLQAEYE---QKLAEYKALQEKRS 250


>AL117195-13|CAB55023.2|  455|Caenorhabditis elegans Hypothetical
           protein Y57A10A.20 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 45  EEFEKSLRYINDHVFKLLEETFK 113
           +  EK LR++ D  F+L EET K
Sbjct: 282 DNMEKPLRWLRDEAFRLREETVK 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,720,372
Number of Sequences: 27780
Number of extensions: 332226
Number of successful extensions: 844
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)