Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2007
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom... 34 0.026
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 28 1.3
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 28 1.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 2.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.2
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.2
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.0
>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 33.9 bits (74), Expect = 0.026
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 137 SNLLKQITKELRDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKH 295
S+L K +TK + KC T+ + + S P L A GF ++P++ N++H
Sbjct: 119 SHLYKIVTKTTKVEGRKCWTSGELLRLNGSEPPVLCAKASGFFVEPSKLNLEH 171
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 281 SNVK-HTDGAIQNDENDLPNQEAPQSQKVGGIFAF 382
S++K T ++N+EN+L ++ P VG +F F
Sbjct: 1637 SSIKLSTKEGLENEENELKDKAPPNEPNVGSLFLF 1671
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 140 NLLKQITKELRDAYSK-CSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAI 310
+LL+Q+ L D+ ++ ++PS + S S S + G + +PT DG++
Sbjct: 445 SLLEQLADALNDSTARRTQSSPSGTNSSTSTSSTSSKHSTGISTEPTTGEENKQDGSV 502
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 197 TPSMKQTQNSLP-SYLSNLAPGFAMDPT-QSNVKHTDGAIQNDENDLPNQEAPQSQ 358
T S+ Q Q P S A F P+ SNV+ +G+I N + +P Q P ++
Sbjct: 728 TASINQQQQPQPQSQQQQQASQFPQAPSVSSNVRPINGSIPNAQPSVPGQAQPAAK 783
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 191 STTPSMKQTQNSLPSYLSNLAPGFAMDPT--QSNVKHTDGAIQNDENDL 331
++TP T++S P + PGF D T QSN D E DL
Sbjct: 1216 TSTPQAMLTKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSELEEDL 1264
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 623 PRSVNHNVTCVMQELGYVDDNMEPNFEHIRARIGSLPVSDELKG 754
PRS+++N + L DN ++ +R SLP+ D +KG
Sbjct: 375 PRSLSYNPAEKVALLTSSADNGVYELVNVSSRSNSLPLKDNIKG 418
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.2
Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Frame = +2
Query: 140 NLLKQITKELRDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVK--------- 292
N+ + + Y T P T N+LPSY +NLA A+ P +++
Sbjct: 384 NVSRNSNNNSPEGYDNNRTNP----TVNNLPSYPTNLARPKAIKPMPTSIHGQTSPLSPI 439
Query: 293 ---HTDGAIQNDENDLPNQEAP----QSQKVGGIFAFRPQGVPFPQ 409
HT + +D LP+ +P S + A P P PQ
Sbjct: 440 PPVHTTHGLVSDIRPLPSVSSPIMRADSTPISHNLAVTPSFSPIPQ 485
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 389 QGVPFPQPGMSPFMMPAGPQFRP 457
QG P P P PFMMP PQ P
Sbjct: 419 QGFPAPFP---PFMMPGLPQMPP 438
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 350 QSQKVGGIFAFRPQGVPFPQPGMSPFMMPAGP 445
Q+Q G +F PQ F QP + +MP P
Sbjct: 194 QTQPFGAAPSFAPQPTGFVQPQQTGVVMPPQP 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,260
Number of Sequences: 5004
Number of extensions: 49154
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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