Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2007
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 35 0.062
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 33 0.25
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 30 1.8
02_02_0240 + 8196140-8198248,8198381-8198650 29 3.1
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 29 4.1
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 5.4
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 28 7.1
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491... 28 7.1
01_01_1063 - 8386813-8387236,8387322-8387779 28 7.1
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 35.1 bits (77), Expect = 0.062
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +2
Query: 239 LSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAPQSQKVGGIFAFRPQGVPFPQPGM 418
++N PG +++ TQ+ V T + N N + Q G F FRP GVPF Q
Sbjct: 1268 MTNFIPGGSVN-TQAAVNFTPSVPPDYGN---NNLYIKPQGSNGNFQFRPTGVPFQQGTF 1323
Query: 419 SPFMMPAGPQFRPY 460
S F P RP+
Sbjct: 1324 SAFPSAQTPPVRPH 1337
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 33.1 bits (72), Expect = 0.25
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Frame = +2
Query: 242 SNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAPQSQKVGGIFAFRPQGVPFPQPGM- 418
+N PG AM P+Q V N +P P Q G +P +P QP M
Sbjct: 545 NNQQPG-AMQPSQPAVTQMQSGFANQFGSMPPHSMPGMQFPG----MQPSPMPGAQPVMM 599
Query: 419 --SPFMMP-----AGPQFRPYNPAM 472
P MMP A PQ R Y P M
Sbjct: 600 YAQPMMMPGMQFAAMPQPRMYGPQM 624
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 365 GGIFAFRP-QGVPFPQPGMSPFMMPAGPQF-RPYNPAM 472
GG +RP G +P PGM+P P PQ+ RP PA+
Sbjct: 35 GGAPPYRPASGFVWPPPGMTPRPGPPQPQYPRPGPPAV 72
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 329 LPNQEAPQSQKVGGIFAFRPQGVPFPQPGMSPFMMPAGPQFRPYN 463
+P Q PQ ++ G P +P P PG +P+ MP P RPY+
Sbjct: 599 IPGQ--PQVIRMPGSMGPMPTNIPPPPPGQNPY-MPGPP--RPYS 638
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = +2
Query: 269 DPTQSNVKHTDGAIQND-ENDLPNQEAPQSQKVGGIFAFRPQGVPFPQPGMSPFMMPAGP 445
DPT ++V A+ + LP P++ + G A RP P P P
Sbjct: 55 DPTPTSVTEPANAVPTRVPSPLPEPRIPRAAAIRGPLAARPHEFAEPSPSTRRRFNRRSP 114
Query: 446 QFRPYNPAMF 475
Q RP + F
Sbjct: 115 QRRPPHQRRF 124
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +2
Query: 224 SLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAPQSQKVG-GIFAFRPQG 394
S+ L + PG A T N D +Q DE+ + + A + G + F QG
Sbjct: 1695 SIGQILGDAKPGSASSKTTKNTPEVDSGLQQDEDRIQSTNASSTLAAGEDVRRFSEQG 1752
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 562 RRGQSDVSPNRSSNSTGTPRAALRESQRDLRDAGIRIRGR 681
RRG D S S+ + A R+ R L+ AGIR+R R
Sbjct: 120 RRGGRDSSAAASAPPSAAELALPRDELRRLQGAGIRLRNR 159
>03_02_0011 -
4909292-4909434,4909520-4909626,4910100-4910171,
4910713-4910803,4911136-4911272,4911377-4911417,
4911681-4911746,4912756-4913082
Length = 327
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 155 ITKELRDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLP 334
+ +EL AYS+C + QNS S SN+ +S+ +G+ + ++ LP
Sbjct: 243 VNRELLKAYSQCENGTEIINVQNSWLSSNSNVPKSPVNAAEKSHQSTEEGSDADSDDGLP 302
Query: 335 NQE 343
E
Sbjct: 303 PLE 305
>01_01_1063 - 8386813-8387236,8387322-8387779
Length = 293
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 404 PQPGMSPFMMPAGPQFRPYNP 466
P PGM P MP GP P+ P
Sbjct: 235 PHPGMPPPPMPYGPHPHPHQP 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,901,109
Number of Sequences: 37544
Number of extensions: 376856
Number of successful extensions: 1286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -