Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2007
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    31   0.68 
Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical p...    31   1.2  
AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    28   6.4  
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        28   8.4  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    28   8.4  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    28   8.4  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    28   8.4  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 290 KHTDGAIQNDENDLPNQEAPQSQKVGGIFAFRPQGVPFPQPGMSPFMMPAGP 445
           K  DG+ +  +    +Q+AP S K    FA  P G P P P +     PA P
Sbjct: 117 KKPDGSEKKTQTQTEDQKAPDSPKKDDFFA--PPGAPDPVPAVPVEPSPAPP 166


>Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 617 HAPRSVNHNVTCVMQELGYVDDNMEPNFEHI 709
           HA    N      ++EL YVDD++E N EH+
Sbjct: 138 HAHDQYNKKGLRALEELEYVDDDIETNLEHL 168


>AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 617 HAPRSVNHNVTCVMQELGYVDDNMEPNFEHI 709
           HA    N      ++EL YVDD++E N EH+
Sbjct: 138 HAHDQYNKKGLRALEELEYVDDDIETNLEHL 168


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
           protein K08E7.5a protein.
          Length = 1221

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = +2

Query: 140 NLLKQITKELRDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAI--Q 313
           NLL Q+ ++ +DA +K S+  S K + +    Y    AP  + +P++ N    DG+I   
Sbjct: 200 NLLTQLIQKKKDAPNKGSSEKSSKWSDDHASGYPEGSAP--SAEPSE-NQYEQDGSIPSS 256

Query: 314 NDE---NDLPNQEAPQSQKVGGIFAFRP 388
           ND     D+P  +   S   G   A  P
Sbjct: 257 NDYKELTDVPGTKPSSSASRGSNMAGNP 284


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +2

Query: 212 QTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAPQSQKVGGIFAFRPQ 391
           QT N +P     +AP  A  P+ S+  +     +  +  +P+ E+P +Q    I A  P+
Sbjct: 531 QTDNQVPETSHEMAPAPAPQPSPSSPVYGPTPSEPAKPSMPSGESP-AQPEPSIPAVNPE 589

Query: 392 GVPFPQPGMSPFMMPAGP 445
             P  QP  S  +  A P
Sbjct: 590 PSP-SQPSSSGPIQTAPP 606


>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 386 PQGVPFPQPGMSPFMMPAGPQFRPYNPAM 472
           P G P   PG  PF  P+ PQ  P   AM
Sbjct: 447 PGGYPMSAPGKMPFGSPSFPQSAPSPAAM 475


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 756 SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 661
           SP S+S T   P  A   + +GS + STYP S
Sbjct: 17  SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 48


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 756 SPLSSSETGRLPILALMCSKFGSMLSSTYPNS 661
           SP S+S T   P  A   + +GS + STYP S
Sbjct: 122 SPASTSSTAYSPPPATSSTTYGSSIPSTYPPS 153


>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 194 TTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAP 349
           T+ S   + +S  S  S+  P      T+ +   +DG  +NDE++LP+   P
Sbjct: 802 TSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESELPDSADP 853


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 194 TTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAP 349
           T+ S   + +S  S  S+  P      T+ +   +DG  +NDE++LP+   P
Sbjct: 766 TSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESELPDSADP 817


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 194 TTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAP 349
           T+ S   + +S  S  S+  P      T+ +   +DG  +NDE++LP+   P
Sbjct: 802 TSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESELPDSADP 853


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
           partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 194 TTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQEAP 349
           T+ S   + +S  S  S+  P      T+ +   +DG  +NDE++LP+   P
Sbjct: 802 TSSSGADSSHSRQSSASSAVPAVPARLTERDSIVSDGTSRNDESELPDSADP 853


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 484 RQLEHGRVIRAELRPGRHHEWRHSGLGEWNPLRSKSE 374
           R+LE  R+I  EL+ G+H E  H     W+  ++++E
Sbjct: 96  RELERQRIIEEELKSGKHDE--HDDDPVWSMKKAQAE 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,505
Number of Sequences: 27780
Number of extensions: 295878
Number of successful extensions: 974
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)