Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2006
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 30 0.14
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 30 0.14
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 29 0.41
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 0.55
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 2.2
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 2.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 6.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 6.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 6.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 6.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 6.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 6.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 6.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 6.7
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 6.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 6.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 6.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 6.7
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 24 8.9
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 24 8.9
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 8.9
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 24 8.9
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 30.3 bits (65), Expect = 0.14
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 7 PVTKKLRSARLVWYGHVMRGNENEVGKRMLTMNVEGYRG---KGRPKKKWMNCVK 162
P+T+ L+S L +G ++ NE + K + + +EG R + +K W+ C K
Sbjct: 306 PLTRALKSGNLGEFGKCLQKNETLLAKTKIYLTLEGTRDLCIRNLFRKTWIICGK 360
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 30.3 bits (65), Expect = 0.14
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -1
Query: 313 NRQETAKRIIIHHHSPALLPVTWGRHNMFSPSILFYHIPFLRSLPSYPYRLSHNSSIS 140
N +T ++ + +P LP TW RH+ PS P + +Y SH + +S
Sbjct: 365 NINDTPDSVLANSPTPRHLPYTWSRHSTSGPSRSTVLNPSTSRMSNYTGLESHLAQLS 422
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.41
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 40 VWYGHVMRGNENEVGKRMLTMNVEGYRG-KGRPKKK 144
+W HV+R E+ KR + N++ +RG G+ KKK
Sbjct: 59 LWKDHVLRDFGLELQKRTILNNIDDWRGLYGKLKKK 94
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 28.3 bits (60), Expect = 0.55
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Frame = -3
Query: 137 LGLPFPLY--------PSTFIVNILLPTSFSFPLI 57
+G+PFP Y P+ I+ +LP+SFS P++
Sbjct: 323 MGIPFPFYDAETRTVPPTNIIIENILPSSFSKPVV 357
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 289 IIIHHHSPALLPVTWGRHNMFSPSILFYHIPFLRS 185
I+IH +S LLP + +P + F H PF S
Sbjct: 221 ILIHDYSLFLLPRLIRKQLSDAPIVFFLHAPFCTS 255
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 26.2 bits (55), Expect = 2.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -1
Query: 331 ETQKYNNRQETAKRI--IIHHHSPALLPVTWGRHNM--FSPSI---LFYHIPFLRSLPSY 173
+T +NR T++ + I + S A TW R N+ PS+ + Y+IP L LP+Y
Sbjct: 13 KTSFIDNRTSTSRPLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRINYYIPVLHWLPNY 72
Query: 172 PYR 164
R
Sbjct: 73 SLR 75
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 261 FSQSLGVGTTCFLLPY--SSIIYHFFAHYPLTHIVF 160
F S+G+GT C+ LP+ +IY F A + ++F
Sbjct: 316 FLDSIGIGTACW-LPFLIVMVIYLFAALFVALLVIF 350
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 325 QKYNNRQETAKRI----IIHHHSPALLPV 251
Q YNN +A ++ I+H +SPAL P+
Sbjct: 1116 QSYNNAIHSATQMTPFEIVHRYSPALSPL 1144
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 24.2 bits (50), Expect = 8.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 43 WYGHVMRGNENEVGKRMLTMNVEGYRGKGRPKKKWMNCVKDD 168
W+ +G + E +R VEGYR +GR + + DD
Sbjct: 541 WFRETQKG-DFETWERECFSQVEGYRWRGRTYQHCLASGLDD 581
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 24.2 bits (50), Expect = 8.9
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = -2
Query: 231 CFLLPYSSIIYHFFAHYPLTHIV--FHTI 151
CFLLP IIY F T + HT+
Sbjct: 169 CFLLPVGVIIYTMFGGIKATFLTDYIHTV 197
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 267 LPFSQSLGVGTTCFLLPYSSIIYHFFAHY 181
LPFS G+ +PYS F HY
Sbjct: 490 LPFSSIHSTGSRALYMPYSFETCSAFLHY 518
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 24.2 bits (50), Expect = 8.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 82 RPHFHFLSSHVHTILNAHFSASLS 11
+P +FL HV+ LN+ S SLS
Sbjct: 374 KPVHYFLLRHVYVPLNSFMSKSLS 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,224
Number of Sequences: 5004
Number of extensions: 38609
Number of successful extensions: 136
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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