Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2006
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0398 + 24933894-24933916,24934015-24934555                       32   0.18 
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    30   0.93 
12_02_0056 + 12955832-12956410,12957398-12957499                       29   2.2  
10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869     28   3.8  
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    28   3.8  
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823...    27   6.6  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    27   6.6  
08_02_0788 + 21201533-21201808,21201923-21202012,21202501-212025...    27   8.7  

>04_04_0398 + 24933894-24933916,24934015-24934555
          Length = 187

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +1

Query: 133 PKKKWMNCVKDDMGKRVVSEE-MVYDRRVWKE 225
           PKKK+  CV+D+ G + ++E+ MV    +W+E
Sbjct: 19  PKKKFRFCVRDEYGTKALAEQVMVKSTSLWRE 50


>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 198 HFFAHYPLTHIVFHTIHPFLLR 133
           HF A +PL H  FH  HP+++R
Sbjct: 366 HFAASFPLWHRKFHWRHPWIIR 387


>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 197 WYMIEEYGRRKHVVPTPSDW 256
           W ++ + GRR+HVVP   +W
Sbjct: 25  WIVVLQKGRRRHVVPAFGEW 44


>10_08_0938 + 21693629-21694360,21694558-21694613,21694836-21694869
          Length = 273

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 172 GKRVVSEEMVYDRRVWKEKTCCADPK 249
           GKRV SEE  Y R V KE+   A P+
Sbjct: 175 GKRVRSEEQYYLREVKKERLIMAPPE 200


>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +1

Query: 10  VTKKLRSARLVWYGHVMRGNENEVGKRMLTMNVEGYRGKGRPKKKWMNCVKDDMGKRVVS 189
           V  K  S  L +YG+ +R +  ++G+R L  ++     KG  + K+   V  +  + VVS
Sbjct: 235 VWDKRASQPLCYYGYFIRFHVFDIGRRSLWFSIRVQVKKGSSESKYEVIVGPE-NRTVVS 293

Query: 190 EE 195
           E+
Sbjct: 294 ED 295


>03_06_0763 +
           36081546-36081669,36081755-36082170,36082280-36082339,
           36082466-36083101
          Length = 411

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 270 LLPFSQSLGVGTTCFLLPYSSIIYHFFAHYPLTHIVFH 157
           L   S++  +GT   +  YS+++Y+++ H P ++ + H
Sbjct: 123 LCHLSRACFLGTCAPICIYSTLLYYYYLHLPNSNHLLH 160


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 282 IMIRFAVSCLLLYFCVSV*LTQSILIYLIFFLFDGWF*GSFYVLY 416
           + +  A+  +LLY  +S  L++  L Y + F F  +F    +VLY
Sbjct: 165 VNLPMAIGFMLLYTKLSNVLSREALFYTVIFPFIAFFGAFAFVLY 209


>08_02_0788 +
           21201533-21201808,21201923-21202012,21202501-21202588,
           21202811-21202944,21203086-21203135,21203248-21203340,
           21203469-21203560,21203762-21203868,21204194-21204229
          Length = 321

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 309 GKKPQNESLFIIILLPFSQSLGVGTTCFL 223
           G+ P+ E+  +++LLP   S  + T C L
Sbjct: 190 GETPERETDSLVLLLPLIGSSNISTACLL 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,048,815
Number of Sequences: 37544
Number of extensions: 225476
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)