Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2006
         (439 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145649-1|AAD38624.1|  556|Drosophila melanogaster BcDNA.GH0838...    29   2.1  
AE014298-777|AAF46064.1|  556|Drosophila melanogaster CG3149-PA ...    29   2.1  
AE013599-718|AAM71081.1|  105|Drosophila melanogaster CG30352-PA...    29   2.8  
X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein ...    27   8.4  
X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein ...    27   8.4  
AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-P...    27   8.4  

>AF145649-1|AAD38624.1|  556|Drosophila melanogaster BcDNA.GH08388
           protein.
          Length = 556

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 347 EYSYLFNIFSVRRLVLRFILRAIF 418
           +Y+YL  IFSV  LVL +IL  IF
Sbjct: 430 KYNYLMAIFSVSFLVLSYILTGIF 453


>AE014298-777|AAF46064.1|  556|Drosophila melanogaster CG3149-PA
           protein.
          Length = 556

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 347 EYSYLFNIFSVRRLVLRFILRAIF 418
           +Y+YL  IFSV  LVL +IL  IF
Sbjct: 430 KYNYLMAIFSVSFLVLSYILTGIF 453


>AE013599-718|AAM71081.1|  105|Drosophila melanogaster CG30352-PA
           protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 284 NDSFCGFLPIVVFLC-FSLTYTEYSYLFNIFSVRRLVLRFILRAIF 418
           ++S C FLP+  F C FS   T +    +++ +R L   F  R +F
Sbjct: 40  HNSSCSFLPLSTFPCGFSYILTPFCEFSSLYPLRWLNAFFFCRFVF 85


>X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein
           protein.
          Length = 1332

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 124 KGRPKKKWMNCVKDDMGKRVVSEEMVYDRRVWKEKTCCADPK 249
           + R KKK  +  KDD+   V SEE +  R   + KT C   K
Sbjct: 833 RDREKKKLSSLSKDDLLVEVRSEEYINLRSSARSKTDCVRKK 874


>X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein
           protein.
          Length = 1332

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 124 KGRPKKKWMNCVKDDMGKRVVSEEMVYDRRVWKEKTCCADPK 249
           + R KKK  +  KDD+   V SEE +  R   + KT C   K
Sbjct: 833 RDREKKKLSSLSKDDLLVEVRSEEYINLRSSARSKTDCVRKK 874


>AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-PA
           protein.
          Length = 1332

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 124 KGRPKKKWMNCVKDDMGKRVVSEEMVYDRRVWKEKTCCADPK 249
           + R KKK  +  KDD+   V SEE +  R   + KT C   K
Sbjct: 833 RDREKKKLSSLSKDDLLVEVRSEEYINLRSSARSKTDCVRKK 874


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,813,483
Number of Sequences: 53049
Number of extensions: 384435
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)