Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2006
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical ...    32   0.16 
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    32   0.16 
U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical pr...    32   0.21 
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    31   0.48 
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68115-5|CAA92166.1|  183|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U53339-2|AAA96198.2|  542|Caenorhabditis elegans Nematode astaci...    28   2.6  
U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine rec...    27   4.5  
U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical...    27   4.5  
U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    27   7.9  
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    27   7.9  

>AF003140-5|AAD47120.1|  814|Caenorhabditis elegans Hypothetical
           protein C44E4.1b protein.
          Length = 814

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +1

Query: 91  MLTMNVEGYRGKGR-----PKKKWMNCVKDDMGKRVVSEEMVYDRRVWKEKTCCADP 246
           +LT NV+   G  R      +K +   VK  +G++++ +  + +R +   +TCCADP
Sbjct: 159 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 215


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +1

Query: 91   MLTMNVEGYRGKGR-----PKKKWMNCVKDDMGKRVVSEEMVYDRRVWKEKTCCADP 246
            +LT NV+   G  R      +K +   VK  +G++++ +  + +R +   +TCCADP
Sbjct: 2057 LLTTNVDSSSGSSRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2113


>U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical
           protein C32D5.7 protein.
          Length = 435

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = -2

Query: 279 IIILLPFSQSLG-VGTTCFLLPYSSIIYHFFAHYPLTHIVFHT-IHPFLLR 133
           I  ++    SLG V +T FL  + +++  +F  +PLT +++H  +H F  R
Sbjct: 276 IFYMVGIQDSLGDVVSTIFLYVFDAVVILYFIAFPLTTVIYHPYVHCFRRR 326


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 91   MLTMNVEGYRGKGRP---KKKWMNCVKDDMGKRVVSEEMVYDRRVWKEKTCCADP 246
            +LT NV+   G+      +K +   VK  +G++++ +  + +R +   +TCCADP
Sbjct: 2057 LLTTNVDSSSGRFLLCYLRKIFERIVKIPIGRKILVQRRMVERMMSVIRTCCADP 2111


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 216 YSSIIYHFFAHYPLTHIVFHTIHPFLLRST 127
           Y  ++YHF   YPL   +F TI PF L  T
Sbjct: 22  YLGVVYHFMLTYPLA--LFVTILPFFLLFT 49


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -2

Query: 321 NTTIGKKPQNESLFIIILLPFSQSLGVGTTCFLLPYSSIIYHFFAHYPLTHIVFHTIHPF 142
           NT    K  + +LF+ +L+  + S+GV     +  YS++I+ ++     + ++F   +P 
Sbjct: 183 NTPEPVKSSHPALFVFLLMVINVSIGVP---LMQTYSALIFTYYGMTTHSALLFSVFYPI 239

Query: 141 L 139
           L
Sbjct: 240 L 240


>U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical
           protein F30B5.6 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 311 IVVFLCFSLTYTEYSYLFNIFSVRRLVLRFILRAIF 418
           IVVFLC ++ Y     LF IF ++++  +  L  ++
Sbjct: 11  IVVFLCETICYLNLRLLFTIFYLKKIAFKPDLTLVY 46


>Z68115-5|CAA92166.1|  183|Caenorhabditis elegans Hypothetical
           protein F19H6.6 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 393 RTSRRTEKILNK*EYSV*VKLKHKNTTIGKKPQNESL 283
           +T RRT+K +N    +  +KLK++N+ +  + Q   L
Sbjct: 114 KTKRRTKKSINPKRVAAQIKLKYQNSQLQSQTQTSQL 150


>U53339-2|AAA96198.2|  542|Caenorhabditis elegans Nematode astacin
           protease protein29 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 272 MMMNNDSFCGFLPIVVFLCFSLTY 343
           M+  N SFCGFL +V+  C S  +
Sbjct: 1   MISKNTSFCGFLILVLATCMSAQF 24


>U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein97 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 248 SDWEKGRRMMMNNDSFCGFLPIVVFLCFSLTYTEYSYLFNIFSVRRLV 391
           S+   G  + M    F   LPI + L F + YT++ YL+    V  LV
Sbjct: 275 SEKTTGLVIFMTISFFLLELPIGIGLVFQVAYTDFGYLYFATYVNHLV 322


>U42437-2|AAW88401.1|  294|Caenorhabditis elegans Hypothetical
           protein F30B5.8 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 311 IVVFLCFSLTYTEYSYLFNIFSVRRLVLRFILRAIF 418
           IVVFLC ++ +     LF IF ++++  +  L  ++
Sbjct: 11  IVVFLCETICFLNLRLLFTIFYLKKIAFKQDLTLVY 46


>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 260 KGRRMMMNNDSFCGFLPIVVFLCFSLTYTEYSYLFN 367
           +GRR+    D  C  +  ++FL F++ Y  +  +FN
Sbjct: 459 RGRRVAQRIDERCRIVFPMIFLLFNVAYWSFYLVFN 494


>AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical
           protein Y53F4B.12 protein.
          Length = 721

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 23/84 (27%), Positives = 42/84 (50%)
 Frame = -2

Query: 417 NIARKMNLRTSRRTEKILNK*EYSV*VKLKHKNTTIGKKPQNESLFIIILLPFSQSLGVG 238
           ++ +KM LRT R  E+ L   E++  + +       G K  + S+ + I+LPFS +   G
Sbjct: 3   SLLQKM-LRTRRVDEQFLRHSEWARRLGVPLMVALAGIK--SISMMLFIILPFSLTQVAG 59

Query: 237 TTCFLLPYSSIIYHFFAHYPLTHI 166
            +  L P  + +  FF+   L+ +
Sbjct: 60  PSTVLAPIFAFLIIFFSAAHLSEL 83


>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 82  GKRMLTMNVEGYRGKGRPKKKWMNC-VKDDMGKRVVSEEMVYDRRVWKE 225
           GK   +   EG  G    KKKW    V+D +   V+ ++  YD +++KE
Sbjct: 10  GKAPPSKKKEGSGGGKAKKKKWSKGKVRDKLNNMVLFDQATYD-KLYKE 57


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 248 SDWEKGRRMMMNNDSFCGFLPIVVFLCFSLTYTEYSYLF 364
           S+   G  + M    F   LPI + L F ++YT++ YL+
Sbjct: 273 SEKTTGLVIFMTVSFFVLELPIGISLIFQVSYTDFGYLY 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,068,920
Number of Sequences: 27780
Number of extensions: 214732
Number of successful extensions: 598
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)