Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2006
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.64 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 318 TTIGKKPQNESLFIIILLPFSQSLGV 241
           T + KKP   S  +  L PFS +L +
Sbjct: 545 TILEKKPSRSSTLVSFLQPFSNTLWI 570



 Score = 21.0 bits (42), Expect = 5.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 205 HIPFLRSLPSYPYR 164
           H+ FLR++P Y ++
Sbjct: 141 HVSFLRTVPPYSHQ 154


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 52  HVMRGNENEVGKRMLTM 102
           HV+RGNEN    ++++M
Sbjct: 623 HVLRGNENIYSGKLISM 639


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 322 KYNNRQETAKRIIIHHHSPALLPVTWG-RHNMFSPSILFYH 203
           +Y+NR +      IHH+    LP T+   H  F   ++  H
Sbjct: 123 RYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVH 163


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 322 KYNNRQETAKRIIIHHHSPALLPVTWG-RHNMFSPSILFYH 203
           +Y+NR +      IHH+    LP T+   H  F   ++  H
Sbjct: 123 RYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVH 163


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 322 KYNNRQETAKRIIIHHHSPALLPVTWG-RHNMFSPSILFYH 203
           +Y+NR +      IHH+    LP T+   H  F   ++  H
Sbjct: 174 RYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVH 214


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 322 KYNNRQETAKRIIIHHHSPALLPVTWG-RHNMFSPSILFYH 203
           +Y+NR +      IHH+    LP T+   H  F   ++  H
Sbjct: 123 RYSNRSQYEFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVH 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,427
Number of Sequences: 438
Number of extensions: 2691
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)