Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2005
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   5.4  
AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81461-4|CAB62798.1|  256|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical...    27   9.5  
AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -1

Query: 298 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 203
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>AL132851-1|CAB60411.1|  403|Caenorhabditis elegans Hypothetical
           protein Y53H1B.1 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = -2

Query: 564 TYHTQYNTR**SFRRFPYGNLVTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           TY+   N        F + + V+T+     S+ +N         PPR GP  S   S  S
Sbjct: 230 TYNKDNNVAYAQVNTFKFADKVSTYFQCAVSTCMNTEGMCDGKTPPRCGPAGSFRSSSSS 289

Query: 384 SD 379
           +D
Sbjct: 290 ND 291


>Z70208-7|CAA94139.1|  287|Caenorhabditis elegans Hypothetical
           protein F54B11.7 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 456 PTTPTAVKPPRVGPKTSLNHS-IGSSD 379
           PTTP A KP    PKTSL+ S  GS+D
Sbjct: 69  PTTPPA-KPKEPAPKTSLSKSDSGSAD 94


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 324 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 223
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


>Z82078-9|CAE11308.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 501 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>Z82078-8|CAB04948.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 501 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


>Z81461-4|CAB62798.1|  256|Caenorhabditis elegans Hypothetical
           protein C04F12.6 protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/91 (26%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
 Frame = +2

Query: 242 RPGQPAETPSCWGLGFAIIPHKRGIPSKRES*ARVDYVPALCTHRPSLLPIE*F-SEVFG 418
           + G  A TPS  G      P +   P+     A     P   TH P+   +    + VFG
Sbjct: 55  KEGSEARTPSAAGSAAPTAPAEGAAPAAGAPAAVAPKPPMAATHDPNYQTLAGLDNNVFG 114

Query: 419 PTRGGFTAVGVVGKLTKLDHLEEVKVVTRFP 511
              G   A G  G     D  +  K  T  P
Sbjct: 115 KKDGAAPAAGGGGPAAPAD--QNAKAATHDP 143


>AL023844-13|CAE11312.1|  949|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11b protein.
          Length = 949

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 501 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 115 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 153


>AL023844-12|CAA19535.2|  947|Caenorhabditis elegans Hypothetical
           protein Y48A6B.11a protein.
          Length = 947

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 501 VTTFTSSK*SSLVNFPTTPTAVKPPRVGPKTSLNHSIGS 385
           VT  TS K     +   TP + KPPR  P+T L+    S
Sbjct: 113 VTPSTSKKSQKPRSSDATPVSSKPPRYLPRTPLSEQYTS 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,832
Number of Sequences: 27780
Number of extensions: 269883
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)