Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2002
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    85   5e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    84   7e-18
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    28   0.66 
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   0.87 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   0.87 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   1.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   2.7  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   3.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   4.7  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   4.7  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   4.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   4.7  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 84.6 bits (200), Expect = 5e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +3

Query: 81  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 260
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 261 RRLGTHIRAKRKREELSNVLAQMR 332
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 84.2 bits (199), Expect = 7e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +3

Query: 81  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 260
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 261 RRLGTHIRAKRKREELSNVLAQMR 332
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 359 MVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 234
           +V SL G    L +  A+FFT PL ++VCA + +   +  ++
Sbjct: 544 IVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 295 SVKNLATCSLR*GRQPPRLITITI 366
           SVKNL   SL+    PPRLIT+ +
Sbjct: 421 SVKNLKLLSLKYDVTPPRLITVCV 444


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 177  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 332
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +2

Query: 167  STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 268
            +TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +3

Query: 165 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 296
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/39 (33%), Positives = 27/39 (69%)
 Frame = +3

Query: 213 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 329
           +LLK ++   + K  K+RL  +I  K K+EE+++++A++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 380 FIYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSP 204
           ++   M +   +GG +   SEHV K F L      V  ++   ++ S  +   LK + S 
Sbjct: 116 YLSKYMELSKKIGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSE 175

Query: 203 LLILS 189
           LL ++
Sbjct: 176 LLTIT 180


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 238 LSFDTLSNSIALFSY*ACPTTS 173
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 111 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 215
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 226 TLSNSIALFSY*ACPTTSRTKSRTNLECF 140
           T+++S  LF+  A   T+ TKS  N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,443,245
Number of Sequences: 5004
Number of extensions: 25471
Number of successful extensions: 72
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)