Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2002
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 107 2e-24
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 29 1.0
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 29 1.0
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 1.3
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 28 2.3
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 28 2.3
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 5.4
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 7.1
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 26 9.4
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 26 9.4
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 26 9.4
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 26 9.4
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 26 9.4
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 107 bits (258), Expect = 2e-24
Identities = 55/103 (53%), Positives = 72/103 (69%)
Frame = +3
Query: 27 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 206
+AVGL KGH T++ ++ R R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 207 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 335
+E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+ RK
Sbjct: 59 VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 111 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 248
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 111 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 248
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 108 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 242
++ ++ L T + L+REV G Y++R E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 123 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 242
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 123 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 242
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 27.5 bits (58), Expect = 4.1
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 117 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 290
AR+K + K K + + R+ + +A E LK+ ++++ K L +R+ + K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594
Query: 291 RKREE 305
RK EE
Sbjct: 595 RKAEE 599
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 156 VRDLVREVVGHAQYEKRAMELLKV 227
+RD + EV+G+ Q++K +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 165 LVREVVGHAQYEKRAMELLKV 227
+V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 26.2 bits (55), Expect = 9.4
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 2 RNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 169
RNHG F N S P NN N+ G R S + + ++ SS T+ FS
Sbjct: 415 RNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 3 EIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLV 170
E++A R ++ LR+ H+ +++ K + K I T+ KF+R++
Sbjct: 1128 ELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRNIE 1187
Query: 171 REVVGHAQYE 200
RE G +YE
Sbjct: 1188 REYKGIPEYE 1197
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 231 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM 329
K+ R +KF R L H+R + K +ELS + M
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNM 240
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 3 EIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLV 170
E++A R ++ LR+ H+ +++ K + K I T+ KF+R++
Sbjct: 1128 ELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRNIE 1187
Query: 171 REVVGHAQYE 200
RE G +YE
Sbjct: 1188 REYKGIPEYE 1197
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 26.2 bits (55), Expect = 9.4
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 2 RNHGSSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 169
RNHG F N S P NN N+ G R S + + ++ SS T+ FS
Sbjct: 415 RNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,997,161
Number of Sequences: 27780
Number of extensions: 144039
Number of successful extensions: 376
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -